Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for Peroxide antimalarial treatment timecourse on trophozoite-stage P. falciparum parasites (Study ST001201)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	cell_type:iRBC \| treatment:DHA \| treatment_duration_(h):-
F2	cell_type:iRBC \| treatment:DHA \| treatment_duration_(h):0.5
F3	cell_type:iRBC \| treatment:DHA \| treatment_duration_(h):1.5
F4	cell_type:iRBC \| treatment:DHA \| treatment_duration_(h):3
F5	cell_type:iRBC \| treatment:DMSO \| treatment_duration_(h):-
F6	cell_type:iRBC \| treatment:DMSO \| treatment_duration_(h):0.5
F7	cell_type:iRBC \| treatment:DMSO \| treatment_duration_(h):1.5
F8	cell_type:iRBC \| treatment:DMSO \| treatment_duration_(h):3
F9	cell_type:iRBC \| treatment:OZ277 \| treatment_duration_(h):-
F10	cell_type:iRBC \| treatment:OZ277 \| treatment_duration_(h):0.5
F11	cell_type:iRBC \| treatment:OZ277 \| treatment_duration_(h):1.5
F12	cell_type:iRBC \| treatment:OZ277 \| treatment_duration_(h):3
F13	cell_type:iRBC \| treatment:OZ439 \| treatment_duration_(h):-
F14	cell_type:iRBC \| treatment:OZ439 \| treatment_duration_(h):0.5
F15	cell_type:iRBC \| treatment:OZ439 \| treatment_duration_(h):1.5
F16	cell_type:iRBC \| treatment:OZ439 \| treatment_duration_(h):3
F17	cell_type:unRBC \| treatment:DHA \| treatment_duration_(h):-
F18	cell_type:unRBC \| treatment:DHA \| treatment_duration_(h):0.5
F19	cell_type:unRBC \| treatment:DHA \| treatment_duration_(h):1.5
F20	cell_type:unRBC \| treatment:DHA \| treatment_duration_(h):3
F21	cell_type:unRBC \| treatment:DMSO \| treatment_duration_(h):-
F22	cell_type:unRBC \| treatment:DMSO \| treatment_duration_(h):0.5
F23	cell_type:unRBC \| treatment:DMSO \| treatment_duration_(h):1.5
F24	cell_type:unRBC \| treatment:DMSO \| treatment_duration_(h):3
F25	cell_type:unRBC \| treatment:OZ277 \| treatment_duration_(h):-
F26	cell_type:unRBC \| treatment:OZ277 \| treatment_duration_(h):0.5
F27	cell_type:unRBC \| treatment:OZ277 \| treatment_duration_(h):1.5
F28	cell_type:unRBC \| treatment:OZ277 \| treatment_duration_(h):3
F29	cell_type:unRBC \| treatment:OZ439 \| treatment_duration_(h):-
F30	cell_type:unRBC \| treatment:OZ439 \| treatment_duration_(h):0.5
F31	cell_type:unRBC \| treatment:OZ439 \| treatment_duration_(h):1.5
F32	cell_type:unRBC \| treatment:OZ439 \| treatment_duration_(h):3

Data matrix