Clustering data with heatmap algorithm for Timecourse of NIH-3T3 cells treated with apoptotic inducers (Study ST001740)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	hours:0.17 | treatment:CHX | concentration:20 µg/ml
F2	hours:0.17 | treatment:ETO | concentration:10 µM
F3	hours:0.17 | treatment:MC | concentration:10 µM
F4	hours:0.17 | treatment:Serum | concentration:-
F5	hours:0.17 | treatment:STS | concentration:0.3 µM
F6	hours:0.17 | treatment:TNFα | concentration:10 ng/ml
F7	hours:0.17 | treatment:TPG | concentration:2 µM
F8	hours:0.17 | treatment:VAL | concentration:10 µM
F9	hours:0.17 | treatment:vehicle (DMSO) | concentration:-
F10	hours:1 | treatment:CHX | concentration:20 µg/ml
F11	hours:1 | treatment:ETO | concentration:10 µM
F12	hours:1 | treatment:MC | concentration:10 µM
F13	hours:1 | treatment:Serum | concentration:-
F14	hours:1 | treatment:STS | concentration:0.3 µM
F15	hours:1 | treatment:TNFα | concentration:10 ng/ml
F16	hours:1 | treatment:TPG | concentration:2 µM
F17	hours:1 | treatment:VAL | concentration:10 µM
F18	hours:1 | treatment:vehicle (DMSO) | concentration:-
F19	hours:24 | treatment:CHX | concentration:20 µg/ml
F20	hours:24 | treatment:ETO | concentration:10 µM
F21	hours:24 | treatment:MC | concentration:10 µM
F22	hours:24 | treatment:Serum | concentration:-
F23	hours:24 | treatment:STS | concentration:0.3 µM
F24	hours:24 | treatment:TNFα | concentration:10 ng/ml
F25	hours:24 | treatment:TPG | concentration:2 µM
F26	hours:24 | treatment:VAL | concentration:10 µM
F27	hours:24 | treatment:vehicle (DMSO) | concentration:-
F28	hours:48 | treatment:CHX | concentration:20 µg/ml
F29	hours:48 | treatment:ETO | concentration:10 µM
F30	hours:48 | treatment:MC | concentration:10 µM
F31	hours:48 | treatment:Serum | concentration:-
F32	hours:48 | treatment:STS | concentration:0.3 µM
F33	hours:48 | treatment:TNFα | concentration:10 ng/ml
F34	hours:48 | treatment:TPG | concentration:2 µM
F35	hours:48 | treatment:VAL | concentration:10 µM
F36	hours:48 | treatment:vehicle (DMSO) | concentration:-
F37	hours:6 | treatment:CHX | concentration:20 µg/ml
F38	hours:6 | treatment:ETO | concentration:10 µM
F39	hours:6 | treatment:MC | concentration:10 µM
F40	hours:6 | treatment:Serum | concentration:-
F41	hours:6 | treatment:STS | concentration:0.3 µM
F42	hours:6 | treatment:TNFα | concentration:10 ng/ml
F43	hours:6 | treatment:TPG | concentration:2 µM
F44	hours:6 | treatment:VAL | concentration:10 µM
F45	hours:6 | treatment:vehicle (DMSO) | concentration:-

Data matrix