Perform Volcano plot analysis on selected experimental conditions followed by MS search on significant features

Group1Experimental factorGroup2
Label:CG | Batch:b1 (6)
Label:CG | Batch:b10 (10)
Label:CG | Batch:b11 (4)
Label:CG | Batch:b12 (8)
Label:CG | Batch:b13 (2)
Label:CG | Batch:b2 (12)
Label:CG | Batch:b3 (10)
Label:CG | Batch:b4 (6)
Label:CG | Batch:b5 (12)
Label:CG | Batch:b6 (10)
Label:CG | Batch:b7 (12)
Label:CG | Batch:b8 (14)
Label:CG | Batch:b9 (14)
Label:QC | Batch:b1 (5)
Label:QC | Batch:b10 (5)
Label:QC | Batch:b11 (5)
Label:QC | Batch:b12 (5)
Label:QC | Batch:b13 (3)
Label:QC | Batch:b2 (5)
Label:QC | Batch:b3 (5)
Label:QC | Batch:b4 (5)
Label:QC | Batch:b5 (5)
Label:QC | Batch:b6 (5)
Label:QC | Batch:b7 (5)
Label:QC | Batch:b8 (5)
Label:QC | Batch:b9 (5)
Label:TG | Batch:b1 (14)
Label:TG | Batch:b10 (10)
Label:TG | Batch:b11 (16)
Label:TG | Batch:b12 (12)
Label:TG | Batch:b13 (6)
Label:TG | Batch:b2 (8)
Label:TG | Batch:b3 (10)
Label:TG | Batch:b4 (14)
Label:TG | Batch:b5 (8)
Label:TG | Batch:b6 (10)
Label:TG | Batch:b7 (8)
Label:TG | Batch:b8 (6)
Label:TG | Batch:b9 (6)

Filtering Parameters
Select threshold % for selection below:
Option 1: No filtering
Option 2: Filter by Sum (Analytes whose sum for all samples falls below the threshold % will be excluded)
Option 3: Filter by Mean (Analytes whose mean for all samples falls below the threshold % will be excluded)
Option 4: Filter by Median (Analytes whose median for all samples falls below the threshold % will be excluded)
Option 5: Filter by Sample threshold       must exceed the above threshold per analyte
In order for an analyte to be retained, the % of samples in one/both groups which are non-zero must exceed the threshold.
Option 6: Remove all analytes containing null values
Sample Normalization Parameters
Normalize samples by:
Volcano Plot Parameters
P-value cutoff: Fold-change cutoff:
MS Search Parameters
Search Refmet database
MS Ion polarity:POSITIVE MS search m/z tolerance:
Ion adducts(choose at least one)
Positive mode:
 [M+H]+ [M+H-H2O]+ [M+Na]+ [M+NH4]+ [M+K]+ [M+2H]2+ [M+2Na]2+ [M+2Na-H]+
[M+H-EtnP]+ [M+H-SerP]+
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