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RefMet Classification (as of 11/20/24)
Click on main class/sub class links to view RefMet metabolites. Click on Core links to view core structures which define those classes.
Super class
Main class
Sub class(# metabolites)
Core
?
Alkaloids
Alkaloids
Other alkaloids(80)
-
Alkaloids
Anthranilic acid alkaloids
Acridone alkaloids(29)
View
Alkaloids
Anthranilic acid alkaloids
Benzodiazepine alkaloids(26)
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Alkaloids
Anthranilic acid alkaloids
Phenazine alkaloids(4)
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Alkaloids
Anthranilic acid alkaloids
Quinazoline alkaloids(19)
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Alkaloids
Anthranilic acid alkaloids
Quinoline alkaloids(9)
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Alkaloids
Histidine alkaloids
Imidazole alkaloids(43)
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Alkaloids
Lysine alkaloids
Piperidine alkaloids(11)
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Alkaloids
Lysine alkaloids
Quinolizidine alkaloids(8)
-
Alkaloids
Ornithine alkaloids
Polyamines(26)
-
Alkaloids
Ornithine alkaloids
Pyrrolidine alkaloids(12)
View
Alkaloids
Ornithine alkaloids
Pyrrolizidine alkaloids(5)
View
Alkaloids
Ornithine alkaloids
Tropane alkaloids(21)
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Alkaloids
Pyridine alkaloids
Nicotinic acid alkaloids(149)
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Alkaloids
Pyridine alkaloids
Pyridine alkaloids(3)
-
Alkaloids
Tryptophan alkaloids
3-Alkylindoles(10)
-
Alkaloids
Tryptophan alkaloids
Aspidosperma type(5)
View
Alkaloids
Tryptophan alkaloids
Carbazole alkaloids(10)
View
Alkaloids
Tryptophan alkaloids
Carboline alkaloids(34)
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Alkaloids
Tryptophan alkaloids
Cinchona alkaloids(8)
-
Alkaloids
Tryptophan alkaloids
Ergot alkaloids(7)
-
Alkaloids
Tryptophan alkaloids
Indoleacetic acids(9)
View
Alkaloids
Tryptophan alkaloids
Indoleacrylic acids(1)
-
Alkaloids
Tryptophan alkaloids
Indolecarboxylic acids(25)
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Alkaloids
Tryptophan alkaloids
Indolines(15)
View
Alkaloids
Tryptophan alkaloids
Indolocarbazoles(2)
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Alkaloids
Tryptophan alkaloids
N-alkylindoles(2)
-
Alkaloids
Tryptophan alkaloids
Pyrroloindoles(7)
View
Alkaloids
Tryptophan alkaloids
Pyrroloquinoline alkaloids(4)
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Alkaloids
Tryptophan alkaloids
Simple indole alkaloids(45)
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Alkaloids
Tryptophan alkaloids
Strychnos alkaloids(7)
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Alkaloids
Tryptophan alkaloids
Tryptamines(21)
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Alkaloids
Tyrosine alkaloids
Amarylidaceae alkaloids(7)
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Alkaloids
Tyrosine alkaloids
Aporphine alkaloids(7)
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Alkaloids
Tyrosine alkaloids
Benzophenanthridine alkaloids(8)
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Alkaloids
Tyrosine alkaloids
Betalains(10)
-
Alkaloids
Tyrosine alkaloids
Isoquinoline alkaloids(42)
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Alkaloids
Tyrosine alkaloids
Morphinan alkaloids(23)
View
Alkaloids
Tyrosine alkaloids
Oxazole alkaloids(1)
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Alkaloids
Tyrosine alkaloids
Phenylethylamines(41)
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Alkaloids
Tyrosine alkaloids
Protoberberine alkaloids(10)
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Alkaloids
Tyrosine alkaloids
Tropolone alkaloids(1)
-
Benzenoids
Anilides
Anilides(20)
-
Benzenoids
Anilines
Anilines(18)
View
Benzenoids
Benzaldehydes
Hydroxybenzaldehydes(4)
-
Benzenoids
Benzamides
Benzamides(7)
View
Benzenoids
Benzamides
Hippuric acids(18)
View
Benzenoids
Benzamides
Salicylamides(3)
View
Benzenoids
Benzenediols
Catechols(20)
View
Benzenoids
Benzenediols
Methoxyphenols(1)
-
Benzenoids
Benzenes
Acylaminobenzoic acids(6)
-
Benzenoids
Benzenes
Aminobenzoic acids(15)
-
Benzenoids
Benzenes
Amphetamines(5)
-
Benzenoids
Benzenes
Benzenesulfonamides(8)
View
Benzenoids
Benzenes
Benzenesulfonic acids(10)
View
Benzenoids
Benzenes
Benzenesulfonyl compounds(46)
-
Benzenoids
Benzenes
Benzenetriols(2)
-
Benzenoids
Benzenes
Benzoic acid esters(12)
-
Benzenoids
Benzenes
Benzoic acids(48)
View
Benzenoids
Benzenes
Benzonitriles(2)
-
Benzenoids
Benzenes
Benzophenones(23)
View
Benzenoids
Benzenes
Benzoyl derivatives(7)
-
Benzenoids
Benzenes
Benzyl alcohols(8)
View
Benzenoids
Benzenes
Benzyl cyanides(8)
View
Benzenoids
Benzenes
Benzylethers(9)
-
Benzenoids
Benzenes
Benzyloxycarbonyls(3)
-
Benzenoids
Benzenes
Bisphenols(6)
-
Benzenoids
Benzenes
Cumenes(11)
View
Benzenoids
Benzenes
Dichlorobenzoic acids(1)
-
Benzenoids
Benzenes
Diphenylethers(14)
View
Benzenoids
Benzenes
Diphenylmethanes(54)
View
Benzenoids
Benzenes
Hydroxybenzoic acid esters(3)
-
Benzenoids
Benzenes
Hydroxybenzoic acids(134)
-
Benzenoids
Benzenes
Methoxybenzoic acids(7)
-
Benzenoids
Benzenes
Nitrobenzenes(20)
View
Benzenoids
Benzenes
N-phenylureas(15)
View
Benzenoids
Benzenes
Other benzenes(114)
-
Benzenoids
Benzenes
Phenanthrols(13)
View
Benzenoids
Benzenes
Phenoxy compounds(5)
-
Benzenoids
Benzenes
Phenylbutylamines(7)
View
Benzenoids
Benzenes
Phenylethylamines(5)
View
Benzenoids
Benzenes
Phenylpropanes(26)
View
Benzenoids
Benzenes
Phenylpyruvic acids(4)
View
Benzenoids
Benzenes
Phthalate esters(52)
-
Benzenoids
Benzenes
Phthalic acids(3)
View
Benzenoids
Benzenes
Toluenes(12)
View
Benzenoids
Benzenes
Trifluoromethylbenzenes(8)
-
Benzenoids
Bisphenyls
Bisphenyls(1)
-
Benzenoids
Bisphenyls
Other bisphenyls(22)
View
Benzenoids
Bisphenyls
Polybrominated biphenyls(2)
-
Benzenoids
Bisphenyls
Polychlorinated biphenyls(7)
-
Benzenoids
Chrysenes
Chrysenes(6)
-
Benzenoids
Diarylethers
Diarylethers(7)
-
Benzenoids
Dibenzocycloheptenes
Dibenzocycloheptenes(4)
-
Benzenoids
Diphenylethers
Bromodiphenyl ethers(20)
-
Benzenoids
Fluorenes
Fluorenes(16)
View
Benzenoids
Halobenzenes
Bromobenzenes(3)
-
Benzenoids
Halobenzenes
Chlorobenzenes(33)
-
Benzenoids
Halobenzenes
Dichlorobenzenes(2)
-
Benzenoids
Halobenzenes
Fluorobenzenes(1)
-
Benzenoids
Indanes
Indanes(6)
View
Benzenoids
Indanones
Indanones(4)
View
Benzenoids
Naphthacenes
Naphthacenes(2)
View
Benzenoids
Naphthacenes
Tetracenequinones(9)
-
Benzenoids
Naphthalenes
Naphthalenes(51)
View
Benzenoids
Naphthalenes
Naphthols(17)
View
Benzenoids
Phenanthrolines
Phenanthrolines(4)
View
Benzenoids
Phenols
Acylphloroglucinols(3)
-
Benzenoids
Phenols
Aminophenols(13)
-
Benzenoids
Phenols
Anisoles(13)
View
Benzenoids
Phenols
Benzenetriols(12)
-
Benzenoids
Phenols
Chlorophenols(9)
-
Benzenoids
Phenols
Halophenols(8)
-
Benzenoids
Phenols
Methoxyphenols(23)
-
Benzenoids
Phenols
Nitrophenols(6)
-
Benzenoids
Phenols
Other phenols(52)
View
Benzenoids
Phenols
Phenol esters(3)
-
Benzenoids
Phenols
Phenol ethers(24)
-
Benzenoids
Phenoxyacetic acids
Phenoxyacetic acids(4)
-
Benzenoids
Phenylacetic acids
Phenylacetic acids(9)
-
Benzenoids
Phenylpropenes
Phenylpropenes(6)
-
Benzenoids
Phenylpropylamines
Phenylpropylamines(9)
-
Carbohydrates
Disaccharides
Amino disaccharides(5)
-
Carbohydrates
Disaccharides
Disaccharides(27)
View
Carbohydrates
Glycosyl compounds
Cyanogenic glycosides(16)
-
Carbohydrates
Glycosyl compounds
Glycosylamines(2)
-
Carbohydrates
Glycosyl compounds
Glycosyl compounds(15)
-
Carbohydrates
Glycosyl compounds
Glycosylglycerols(2)
-
Carbohydrates
Glycosyl compounds
Thioglycosides(1)
-
Carbohydrates
Monosaccharides
Amino sugars(44)
-
Carbohydrates
Monosaccharides
Glucosinolates(30)
-
Carbohydrates
Monosaccharides
Heptoses(2)
-
Carbohydrates
Monosaccharides
Hexose phosphates(25)
-
Carbohydrates
Monosaccharides
Hexoses(41)
View
Carbohydrates
Monosaccharides
Monosaccharide phosphates(8)
-
Carbohydrates
Monosaccharides
Monosaccharides(21)
-
Carbohydrates
Monosaccharides
Pentose phosphates(20)
-
Carbohydrates
Monosaccharides
Pentoses(20)
View
Carbohydrates
Monosaccharides
Sugar acids(62)
-
Carbohydrates
Monosaccharides
Sugar alcohols(19)
-
Carbohydrates
Monosaccharides
Tetroses(3)
-
Carbohydrates
Monosaccharides
Trioses(2)
-
Carbohydrates
Oligosaccharides
Oligosaccharides(20)
-
Fatty Acyls
Docosanoids
Docosanoids(55)
-
Fatty Acyls
Eicosanoids
Clavulones(10)
-
Fatty Acyls
Eicosanoids
EpETrE(19)
-
Fatty Acyls
Eicosanoids
HEPE(53)
-
Fatty Acyls
Eicosanoids
Hepoxilins(4)
-
Fatty Acyls
Eicosanoids
HETE(70)
-
Fatty Acyls
Eicosanoids
HETrE(16)
-
Fatty Acyls
Eicosanoids
Isoprostanes(26)
-
Fatty Acyls
Eicosanoids
Leukotrienes(40)
-
Fatty Acyls
Eicosanoids
Levuglandins(2)
-
Fatty Acyls
Eicosanoids
Lipoxins(8)
-
Fatty Acyls
Eicosanoids
Other Eicosanoids(15)
-
Fatty Acyls
Eicosanoids
Prostaglandins(170)
View
Fatty Acyls
Eicosanoids
Thromboxanes(16)
-
Fatty Acyls
Fatty acids
Amino FA(43)
-
Fatty Acyls
Fatty acids
Branched FA(72)
-
Fatty Acyls
Fatty acids
Carbocyclic FA(11)
-
Fatty Acyls
Fatty acids
Dicarboxylic acids(132)
-
Fatty Acyls
Fatty acids
Epoxy FA(2)
-
Fatty Acyls
Fatty acids
Fatty acids(12)
-
Fatty Acyls
Fatty acids
Fatty esters(11)
-
Fatty Acyls
Fatty acids
Halogenated FA(17)
-
Fatty Acyls
Fatty acids
Heterocyclic FA(8)
-
Fatty Acyls
Fatty acids
Hydroxy FA(339)
-
Fatty Acyls
Fatty acids
Keto FA(2)
-
Fatty Acyls
Fatty acids
Methoxy FA(8)
-
Fatty Acyls
Fatty acids
Methyl FA(2)
-
Fatty Acyls
Fatty acids
Mycolic acids(1)
-
Fatty Acyls
Fatty acids
Nitro FA(5)
-
Fatty Acyls
Fatty acids
Oxo FA(74)
-
Fatty Acyls
Fatty acids
Saturated FA(45)
-
Fatty Acyls
Fatty acids
Thia FA(10)
-
Fatty Acyls
Fatty acids
Unsaturated FA(345)
-
Fatty Acyls
Fatty acyl glycosides
Fatty acyl glycosides(11)
-
Fatty Acyls
Fatty acyl glycosides
Sophorolipids(2)
-
Fatty Acyls
Fatty alcohols
Fatty alcohols(87)
-
Fatty Acyls
Fatty aldehydes
Fatty aldehydes(52)
-
Fatty Acyls
Fatty amides
Fatty acyl homoserine lactones(4)
-
Fatty Acyls
Fatty amides
N-acyl amines(1375)
-
Fatty Acyls
Fatty amides
NAE(92)
-
Fatty Acyls
Fatty amides
NAGly(2)
-
Fatty Acyls
Fatty amides
NAOrn(379)
-
Fatty Acyls
Fatty amides
Primary amides(23)
-
Fatty Acyls
Fatty amines
Monoalkylamines(21)
-
Fatty Acyls
Fatty esters
Acyl carnitines(308)
-
Fatty Acyls
Fatty esters
Acyl CoAs(284)
-
Fatty Acyls
Fatty esters
FAHFA(14719)
-
Fatty Acyls
Fatty esters
Fatty lactones(14)
-
Fatty Acyls
Fatty esters
Short fatty esters(54)
-
Fatty Acyls
Fatty esters
Wax diesters(12)
-
Fatty Acyls
Fatty esters
Wax monoesters(203)
-
Fatty Acyls
Fatty ethers
Fatty ethers(2)
-
Fatty Acyls
Fatty nitriles
Fatty nitriles(2)
-
Fatty Acyls
Hydrocarbons
Hydrocarbons(84)
-
Fatty Acyls
Hydrocarbons
Oxygenated hydrocarbons(49)
-
Fatty Acyls
Hydrocarbons
Unsaturated aliphatic hydrocarbons(1)
-
Fatty Acyls
Octadecanoids
12-oxophytodienoic acids(5)
-
Fatty Acyls
Octadecanoids
DiHODA(1)
-
Fatty Acyls
Octadecanoids
DiHODE(12)
-
Fatty Acyls
Octadecanoids
DiHOME(7)
-
Fatty Acyls
Octadecanoids
DiHOTrE(2)
-
Fatty Acyls
Octadecanoids
EpODA(4)
-
Fatty Acyls
Octadecanoids
EpODE(12)
-
Fatty Acyls
Octadecanoids
EpOME(8)
-
Fatty Acyls
Octadecanoids
HODA(9)
-
Fatty Acyls
Octadecanoids
HODE(21)
-
Fatty Acyls
Octadecanoids
HOME(4)
-
Fatty Acyls
Octadecanoids
HOTE(3)
-
Fatty Acyls
Octadecanoids
HOTrE(8)
-
Fatty Acyls
Octadecanoids
HpODE(14)
-
Fatty Acyls
Octadecanoids
HpOME(8)
-
Fatty Acyls
Octadecanoids
HpOTrE(9)
-
Fatty Acyls
Octadecanoids
Jasmonic acids(11)
View
Fatty Acyls
Octadecanoids
KODA(6)
-
Fatty Acyls
Octadecanoids
KODE(5)
-
Fatty Acyls
Octadecanoids
KOTrE(2)
-
Fatty Acyls
Octadecanoids
Other Octadecanoids(9)
-
Fatty Acyls
Octadecanoids
TriHODE(2)
-
Fatty Acyls
Octadecanoids
TriHOME(6)
-
Fatty Acyls
Other Fatty Acyls
Other Fatty Acyls(1)
-
Glycerolipids
Diradylglycerols
DAG(2428)
View
Glycerolipids
Diradylglycerols
Di-O-DAG(1)
-
Glycerolipids
Diradylglycerols
O-DG(1356)
View
Glycerolipids
Diradylglycerols
Other GL(1)
-
Glycerolipids
Glycosyldiradylglycerols
DGDG(1779)
-
Glycerolipids
Glycosyldiradylglycerols
MGDG(1837)
-
Glycerolipids
Glycosyldiradylglycerols
O-DGDG(1110)
-
Glycerolipids
Glycosyldiradylglycerols
O-MGDG(1110)
-
Glycerolipids
Glycosyldiradylglycerols
O-SMGDG(1110)
-
Glycerolipids
Glycosyldiradylglycerols
SQDG(1114)
-
Glycerolipids
Glycosylmonoradylglycerols
DGMG(166)
-
Glycerolipids
Glycosylmonoradylglycerols
MGMG(174)
-
Glycerolipids
Glycosylmonoradylglycerols
SQMG(162)
-
Glycerolipids
Monoradylglycerols
MAG(163)
View
Glycerolipids
Monoradylglycerols
O-MG(12)
View
Glycerolipids
Other Glycerolipids
DGCC(1794)
-
Glycerolipids
Other Glycerolipids
DGGA(1110)
-
Glycerolipids
Other Glycerolipids
DGTS(1832)
-
Glycerolipids
Other Glycerolipids
MGCC(161)
-
Glycerolipids
Other Glycerolipids
MGGA(161)
-
Glycerolipids
Other Glycerolipids
MGTS(161)
-
Glycerolipids
Triradylglycerols
O-TG(257)
View
Glycerolipids
Triradylglycerols
TAG(33957)
View
Glycerophospholipids
Cardiolipins
CL(2086)
View
Glycerophospholipids
CDP-Glycerols
CDP-diacylglycerols(1)
-
Glycerophospholipids
Glycerophosphates
LPA(104)
-
Glycerophospholipids
Glycerophosphates
O-LPA(35)
-
Glycerophospholipids
Glycerophosphates
O-PA(3230)
-
Glycerophospholipids
Glycerophosphates
Ox-LPA(56)
-
Glycerophospholipids
Glycerophosphates
Ox-PA(1566)
-
Glycerophospholipids
Glycerophosphates
PA(2447)
View
Glycerophospholipids
Glycerophosphethanolamines
PE-NMe(77)
-
Glycerophospholipids
Glycerophosphethanolamines
PE-NMe2(77)
-
Glycerophospholipids
Glycerophosphocholines
LPC(243)
-
Glycerophospholipids
Glycerophosphocholines
O-LPC(87)
-
Glycerophospholipids
Glycerophosphocholines
O-PC(4213)
-
Glycerophospholipids
Glycerophosphocholines
Ox-LPC(56)
-
Glycerophospholipids
Glycerophosphocholines
Ox-PC(1570)
-
Glycerophospholipids
Glycerophosphocholines
PC(4331)
View
Glycerophospholipids
Glycerophosphoethanolamines
LNAPE(1110)
-
Glycerophospholipids
Glycerophosphoethanolamines
LPE(183)
-
Glycerophospholipids
Glycerophosphoethanolamines
O-LPE(56)
-
Glycerophospholipids
Glycerophosphoethanolamines
O-PE(3992)
-
Glycerophospholipids
Glycerophosphoethanolamines
Ox-LPE(56)
-
Glycerophospholipids
Glycerophosphoethanolamines
Ox-PE(1571)
-
Glycerophospholipids
Glycerophosphoethanolamines
PE(3324)
View
Glycerophospholipids
Glycerophosphoethanolamines
PE-NAc(1)
-
Glycerophospholipids
Glycerophosphoethanolamines
PE-NMe(7)
-
Glycerophospholipids
Glycerophosphoethanolamines
PE-NMe2(20)
-
Glycerophospholipids
Glycerophosphoglycerols
BMP(463)
-
Glycerophospholipids
Glycerophosphoglycerols
HBMP(1168)
-
Glycerophospholipids
Glycerophosphoglycerols
LPG(88)
-
Glycerophospholipids
Glycerophosphoglycerols
LPGP(53)
-
Glycerophospholipids
Glycerophosphoglycerols
O-LPG(82)
-
Glycerophospholipids
Glycerophosphoglycerols
O-LPGP(18)
-
Glycerophospholipids
Glycerophosphoglycerols
O-PG(3316)
-
Glycerophospholipids
Glycerophosphoglycerols
Ox-LPG(56)
-
Glycerophospholipids
Glycerophosphoglycerols
Ox-PG(1568)
-
Glycerophospholipids
Glycerophosphoglycerols
PG(2562)
View
Glycerophospholipids
Glycerophosphoglycerophosphates
PGP(3)
-
Glycerophospholipids
Glycerophosphoglycerophosphoglycerols
DLCL(168)
-
Glycerophospholipids
Glycerophosphoglycerophosphoglycerols
MLCL(363)
-
Glycerophospholipids
Glycerophosphoinositol bisphosphates
LPIP2(71)
-
Glycerophospholipids
Glycerophosphoinositol bisphosphates
PIP2(174)
-
Glycerophospholipids
Glycerophosphoinositolglycans
LPIM1(38)
-
Glycerophospholipids
Glycerophosphoinositolglycans
LPIM2(38)
-
Glycerophospholipids
Glycerophosphoinositolglycans
PIM1(131)
-
Glycerophospholipids
Glycerophosphoinositolglycans
PIM2(131)
-
Glycerophospholipids
Glycerophosphoinositol monophosphates
LPIP(53)
-
Glycerophospholipids
Glycerophosphoinositol monophosphates
O-LPIP(18)
-
Glycerophospholipids
Glycerophosphoinositol phosphates
PIP(19)
-
Glycerophospholipids
Glycerophosphoinositol phosphates
PIP2(11)
-
Glycerophospholipids
Glycerophosphoinositol phosphates
PIP3(99)
-
Glycerophospholipids
Glycerophosphoinositols
LPI(97)
-
Glycerophospholipids
Glycerophosphoinositols
O-LPI(34)
-
Glycerophospholipids
Glycerophosphoinositols
O-PI(3150)
-
Glycerophospholipids
Glycerophosphoinositols
Ox-LPI(56)
-
Glycerophospholipids
Glycerophosphoinositols
Ox-PI(1566)
-
Glycerophospholipids
Glycerophosphoinositols
PI(2547)
View
Glycerophospholipids
Glycerophosphoinositols
PIP(94)
-
Glycerophospholipids
Glycerophosphoinositol trisphosphates
LPIP3(71)
-
Glycerophospholipids
Glycerophosphoinositol trisphosphates
PIP3(60)
-
Glycerophospholipids
Glycerophosphoserines
LNAPS(1110)
-
Glycerophospholipids
Glycerophosphoserines
LPS(87)
-
Glycerophospholipids
Glycerophosphoserines
O-LPS(32)
-
Glycerophospholipids
Glycerophosphoserines
O-PS(3211)
-
Glycerophospholipids
Glycerophosphoserines
Ox-LPS(56)
-
Glycerophospholipids
Glycerophosphoserines
Ox-PS(1569)
-
Glycerophospholipids
Glycerophosphoserines
PS(2654)
View
Glycerophospholipids
Glyceropyrophosphates
PPA(35)
-
Glycerophospholipids
Other Glycerophospholipids
LPEth(161)
-
Glycerophospholipids
Other Glycerophospholipids
LPM(161)
-
Glycerophospholipids
Other Glycerophospholipids
Other Glycerophospholipids(1)
-
Glycerophospholipids
Other Glycerophospholipids
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Lactones
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2,4,5-trisubstituted oxazoles(4)
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Oxazolopyridines(1)
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Oxepanes(5)
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Oxocins(1)
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Oxolanes(2)
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Phenothiazines(16)
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Phenylbenzimidazoles(1)
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Phenylpiperidines(8)
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Piperazines(19)
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Piperazinoazepines(1)
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Primary aromatic amines(1)
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Pyran carboxylic acids(1)
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Pyranones(6)
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Pyrazinecarboxamides(5)
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Pyrazine carboxylic acids(2)
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Pyrazines(14)
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Pyrrole carboxylic acids(2)
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Cobalamins(5)
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Bi- and oligothiophenes(2)
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Sterols/C26 Bile acids(In-silico)(42)
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Sterols(In silico)
Sterols(In silico)(170)
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