RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet ID	RM0135950
RefMet name	5-Hydroxylysine
Systematic name	(2S,5R)-2,6-diamino-5-hydroxyhexanoic acid
Synonyms	PubChem Synonyms
Exact mass	162.100443 (neutral)	Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M+2K-H]+ [M+Na]+ [M+2Na]2+ [M+2Na-H]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M.CH3]+ [M+Ag]+ [M+H+CH3OH]+ [M+H+CH3CN]+ [M+H+2CH3CN]+ [M+Na+CH3CN]+ [M.NaFormate+H]+ [M.NH4Formate+H]+ [M.TMSi]+ [M.tBuDMSi]+ [M+H-Hexose]+ [M+H-EtnP]+ [M+H-SerP]+ [M-H]- [M-H-H2O]- [M-CH3]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+Na-2H]- [M+K-2H]- [M.Formate]- [M.NaFormate-H]- [M.NH4Formate-H]- [M.F]- [M-H-Ser]- [M.HF2]- M(neutral)    View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
Formula	C6H14N2O3	View other entries in RefMet with this formula
Molecular descriptors
Molfile	37255 (Download molfile/View MW Metabolite Database details)
InChI	InChI=1S/C6H14N2O3/c7-3-4(9)1-2-5(8)6(10)11/h4-5,9H,1-3,7-8H2,(H,10,11)/t4-,5+/m1/s1
InChIKey	YSMODUONRAFBET-UHNVWZDZSA-N	View other enantiomers/diastereomers of this metabolite in RefMet
SMILES	C(C[C@@H](C(=O)O)N)[C@H](CN)O Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super Class	Organic acids
Main Class	Amino acids and peptides
Sub Class	Amino acids
Distribution of 5-Hydroxylysine in NMDR studies
Species	Plot Species distribution
Sample source	Plot Sample source(tissue) distribution
Platform	Platform (MS/NMR) used for detection
Chromatography	Chromatography methods used for detection
Studies	NMDR Studies reporting 5-Hydroxylysine
External Links
Pubchem CID	3032849
ChEBI ID	18040
KEGG ID	C16741
HMDB ID	HMDB0000450
Chemspider ID	2297721
Spectral data for 5-Hydroxylysine standards
NP-MRD ID(NMR)	View NMR spectra
MassBank(EU)	View MS spectra
Structural annotation level
Annotation level	1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving 5-Hydroxylysine

Rxn ID	KEGG Reaction	Enzyme
R03378	GTP + L-Hydroxylysine <=> GDP + 5-Phosphooxy-L-lysine	GTP:5-hydroxy-L-lysine O-phosphotransferase

Table of KEGG human pathways containing 5-Hydroxylysine

Pathway ID	Human Pathway	# of reactions
hsa00310	Lysine degradation	1