RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet ID	RM0156286
RefMet name	Agm-HDCA
Systematic name	N-(3alpha,6alpha-dihydroxy-5beta-cholan-24-oyl)-agmantine
Synonyms	PubChem Synonyms
Exact mass	504.403941 (neutral)	Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M+2K-H]+ [M+Na]+ [M+2Na]2+ [M+2Na-H]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M.CH3]+ [M+Ag]+ [M+H+CH3OH]+ [M+H+CH3CN]+ [M+H+2CH3CN]+ [M+Na+CH3CN]+ [M.NaFormate+H]+ [M.NH4Formate+H]+ [M.TMSi]+ [M.tBuDMSi]+ [M+H-Hexose]+ [M+H-EtnP]+ [M+H-SerP]+ [M-H]- [M-H-H2O]- [M-CH3]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+Na-2H]- [M+K-2H]- [M.Formate]- [M.NaFormate-H]- [M.NH4Formate-H]- [M.F]- [M-H-Ser]- [M.HF2]- M(neutral)    View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
Formula	C29H52N4O3	View other entries in RefMet with this formula
Molecular descriptors
Molfile	204234 (Download molfile/View MW Metabolite Database details)
InChI
InChIKey	PAQLVECHQNPXTI-PDGJDRNSSA-N	View other enantiomers/diastereomers of this metabolite in RefMet
SMILES	C[C@@H](CCC(=O)NCCCCNC(N)=N)[C@@H]1CC[C@@H]2[C@H]3C[C@@H](O)[C@H]4C[C@@H](O)CC[C@@]4(C)[C@@H]3CC[C@]21C Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super Class	Sterol Lipids
Main Class	Bile acids
Sub Class	C24 bile acids
Distribution of Agm-HDCA in NMDR studies
Species	Plot Species distribution
Sample source	Plot Sample source(tissue) distribution
Platform	Platform (MS/NMR) used for detection
Chromatography	Chromatography methods used for detection
Studies	NMDR Studies reporting Agm-HDCA
External Links
Pubchem CID	171117913
Structural annotation level
Annotation level	1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)