RefMet Compound Details

Created with Raphaƫl 2.1.0HNHOHOHHOHO
RefMet ID, RefMet name, exact mass and formula
RefMet IDRM0118750
RefMet nameCer 18:0;O3/39:0
Alternative nameCer(t18:0/39:0)
Systematic nameN-(nonatriacontanoyl)-4R-hydroxysphinganine
SynonymsPubChem Synonyms
Sum CompositionCer 57:0;O3 View other entries in RefMet with this sum composition
Exact mass877.882609 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC57H115NO4View other entries in RefMet with this formula
Molecular descriptors
Molfile87870 (Download molfile/View MW Metabolite Database details)
InChIInChI=1S/C57H115NO4/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-25-26-27-28-29-30-31-32-33-34-35-36-37-38-39-40-42-44-46-48-50-52-
56(61)58-54(53-59)57(62)55(60)51-49-47-45-43-41-16-14-12-10-8-6-4-2/h54-55,57,59-60,62H,3-53H2,1-2H3,(H,58,61)/t54-,55+,57-/m0/s1
InChIKeyGJYPXJUBBIKKCR-PRVGGTGYSA-NView other enantiomers/diastereomers of this metabolite in RefMet
SMILESCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@@H]([C@@H](CCCCCCCCCCCCCC)O)O
Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super ClassSphingolipids
Main ClassCeramides
Sub ClassPhytoCer (Phytoceramides)
Distribution of Cer 18:0;O3/39:0 in NMDR studies
SpeciesPlot Species distribution
Sample sourcePlot Sample source(tissue) distribution
PlatformPlatform (MS/NMR) used for detection
ChromatographyChromatography methods used for detection
StudiesNMDR Studies reporting Cer 18:0;O3/39:0
External Links
Pubchem CID145715032
LIPID MAPSLMSP02039AOP
KEGG IDC12126
Structural annotation level
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving Cer 18:0;O3/39:0

Rxn IDKEGG ReactionEnzyme
R06517 Acyl-CoA + Sphinganine <=> CoA + Dihydroceramideacyl-CoA:sphingosine N-acyltransferase
R06518 Dihydroceramide + H2O <=> Fatty acid + SphinganineN-acylsphingosine amidohydrolase
R06519 Dihydroceramide + 2 Ferrocytochrome b5 + Oxygen + 2 H+ <=> N-Acylsphingosine + 2 Ferricytochrome b5 + 2 H2Odihydroceramide,ferrocytochrome b5:oxygen oxidoreductase (4,5-dehydrogenating)
R06526 Dihydroceramide + 2 Ferrocytochrome b5 + Oxygen + 2 H+ <=> Phytoceramide + 2 Ferricytochrome b5 + H2Odihydroceramide,ferrocytochrome b5:oxygen oxidoreductase (C4-hydroxylating)

Table of KEGG human pathways containing Cer 18:0;O3/39:0

Pathway IDHuman Pathway# of reactions
hsa00600 Sphingolipid metabolism 4
  logo