RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet IDRM0135664
RefMet nameCucurbitacin B
Systematic name[(E,6R)-6-[(2S,8S,9R,10R,13R,14S,16R,17R)-2,16-dihydroxy-4,4,9,13,14-pentamethyl-3,11-dioxo-2,7,8,10,12,15,16,17-octahydro-1H-cyclopenta[a]phenanthren-17-yl]-6-hydroxy-2-methyl-5-oxohept-3-en-2-yl] acetate
SynonymsPubChem Synonyms
Sum CompositionST 32:6;O8 View other entries in RefMet with this sum composition
Exact mass558.319270 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC32H46O8View other entries in RefMet with this formula
Molecular descriptors
Molfile34409 (Download molfile/View MW Metabolite Database details)
InChIInChI=1S/C32H46O8/c1-17(33)40-27(2,3)13-12-23(36)32(9,39)25-21(35)15-29(6)22-11-10-18-19(14-20(34)26(38)28(18,4)5)31(22,8)24(37)16
-30(25,29)7/h10,12-13,19-22,25,34-35,39H,11,14-16H2,1-9H3/b13-12+/t19-,20+,21-,22+,25+,29+,30-,31+,32+/m1/s1
InChIKeyIXQKXEUSCPEQRD-DKRGWESNSA-NView other enantiomers/diastereomers of this metabolite in RefMet
SMILESCC(=O)OC(C)(C)/C=C/C(=O)[C@@](C)([C@H]1[C@@H](C[C@@]2(C)[C@@H]3CC=C4[C@@H](C[C@@H](C(=O)C4(C)C)O)[C@]3(C)C(=O)C[C@]12C)O)O
Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super ClassPrenol Lipids
Main ClassIsoprenoids
Sub ClassC30 isoprenoids
Distribution of Cucurbitacin B in NMDR studies
SpeciesPlot Species distribution
Sample sourcePlot Sample source(tissue) distribution
PlatformPlatform (MS/NMR) used for detection
ChromatographyChromatography methods used for detection
StudiesNMDR Studies reporting Cucurbitacin B
External Links
Pubchem CID5281316
LIPID MAPSLMST01010104
ChEBI ID3941
KEGG IDC08794
HMDB IDHMDB0034927
Spectral data for Cucurbitacin B standards
NP-MRD ID(NMR)View NMR spectra
Structural annotation level
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)
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