RefMet Compound Details

RefMet IDRM0136216
MW structure38311 (View MW Metabolite Database details)
RefMet nameD-Ornithine
Systematic name(2R)-2,5-diaminopentanoic acid
SMILESC(C[C@H](C(=O)O)N)CN   Run Tanimoto similarity search (with similarity coefficient >=0.6)
Exact mass132.089878 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC5H12N2O2View other entries in RefMet with this formula
InChIInChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1
InChIKeyAHLPHDHHMVZTML-SCSAIBSYSA-NView other enantiomers/diastereomers of this metabolite in RefMet
Super ClassOrganic acids
Main ClassAmino acids and peptides
Sub ClassAmino acids
Pubchem CID71082
ChEBI ID16176
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving D-Ornithine

Rxn IDKEGG ReactionEnzyme
R02457 D-Ornithine + H2O + Oxygen <=> 5-Amino-2-oxopentanoic acid + Ammonia + Hydrogen peroxideD-Ornithine:oxygen oxidoreductase (deaminating)
R02459 D-Ornithine + 2-Oxo acid <=> 5-Amino-2-oxopentanoic acid + D-Amino acidD-Ornithine:2-oxoglutarate aminotransferase

Table of KEGG human pathways containing D-Ornithine

Pathway IDHuman Pathway# of reactions
hsa00472 D-Arginine and D-ornithine metabolism 1
hsa01100 Metabolic pathways 1
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