RefMet Compound Details

Created with Raphaël 2.1.0OOHOHN+OHOO
RefMet ID, RefMet name, exact mass and formula
RefMet IDRM0034437
RefMet nameD-Ribosylnicotinate
Systematic name1-(beta-D-ribofuranosyl)pyridinium-3-carboxylate
SynonymsPubChem Synonyms
Exact mass255.074289 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC11H13NO6View other entries in RefMet with this formula
Molecular descriptors
Molfile59971 (Download molfile/View MW Metabolite Database details)
InChIInChI=1S/C11H13NO6/c13-5-7-8(14)9(15)10(18-7)12-3-1-2-6(4-12)11(16)17/h1-4,7-10,13-15H,5H2/t7-,8-,9-,10-/m1/s1
InChIKeyPUEDDPCUCPRQNY-ZYUZMQFOSA-NView other enantiomers/diastereomers of this metabolite in RefMet
SMILESc1cc(c[n+](c1)[C@H]1[C@@H]([C@@H]([C@@H](CO)O1)O)O)C(=O)[O-]
Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super ClassAlkaloids
Main ClassPyridine alkaloids
Sub ClassNicotinic acid alkaloids
Distribution of D-Ribosylnicotinate in NMDR studies
SpeciesPlot Species distribution
Sample sourcePlot Sample source(tissue) distribution
PlatformPlatform (MS/NMR) used for detection
ChromatographyChromatography methods used for detection
StudiesNMDR Studies reporting D-Ribosylnicotinate
External Links
Pubchem CID161233
ChEBI ID58527
KEGG IDC05841
HMDB IDHMDB0006809
Structural annotation level
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving D-Ribosylnicotinate

Rxn IDKEGG ReactionEnzyme
R02295 Nicotinate D-ribonucleoside + Orthophosphate <=> Nicotinate + alpha-D-Ribose 1-phosphate + H+Nicotinate D-ribonucleoside:orthophosphate ribosyltransferase
R03346 Nicotinate D-ribonucleotide + H2O <=> Nicotinate D-ribonucleoside + Orthophosphatenicotinate D-ribonucleotide phosphohydrolase
R03347 Nicotinate D-ribonucleotide + ADP <=> Nicotinate D-ribonucleoside + ATPATP:beta-D-ribosylnicotinate 5-phosphotransferase
R10046 Nicotinate D-ribonucleoside + H2O <=> Nicotinate + D-Ribosenicotinate D-ribonucleoside ribohydrolase

Table of KEGG human pathways containing D-Ribosylnicotinate

Pathway IDHuman Pathway# of reactions
hsa00760 Nicotinate and nicotinamide metabolism 3
hsa01100 Metabolic pathways 1
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