RefMet Compound Details

RefMet ID	RM0033168
MW structure	37659 (View MW Metabolite Database details)
RefMet name	GDP
Systematic name	[({[(2R,3S,4R,5R)-5-(2-amino-6-oxo-6,9-dihydro-1H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid
SMILES	C([C@@H]1[C@H]([C@H]([C@H](n2cnc3c2nc(N)[nH]c3=O)O1)O)O)OP(=O)(O)OP(=O)(O)O   Run Tanimoto similarity search (with similarity coefficient >=0.6)
Exact mass	443.024336 (neutral)	Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M+2K-H]+ [M+Na]+ [M+2Na]2+ [M+2Na-H]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M.CH3]+ [M+Ag]+ [M+H+CH3OH]+ [M+H+CH3CN]+ [M+H+2CH3CN]+ [M+Na+CH3CN]+ [M.NaFormate+H]+ [M.NH4Formate+H]+ [M.TMSi]+ [M.tBuDMSi]+ [M+H-Hexose]+ [M+H-EtnP]+ [M+H-SerP]+ [M-H]- [M-H-H2O]- [M-CH3]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+Na-2H]- [M+K-2H]- [M.Formate]- [M.NaFormate-H]- [M.NH4Formate-H]- [M.F]- [M-H-Ser]- [M.HF2]- M(neutral)    View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
Formula	C10H15N5O11P2	View other entries in RefMet with this formula
InChI	InChI=1S/C10H15N5O11P2/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H ,22,23)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
InChIKey	QGWNDRXFNXRZMB-UUOKFMHZSA-N	View other enantiomers/diastereomers of this metabolite in RefMet
Super Class	Nucleic acids
Main Class	Purines
Sub Class	Purine rNDP
Pubchem CID	135398619
ChEBI ID	17552
Annotation level	1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving GDP

Rxn ID	KEGG Reaction	Enzyme
R00328	GDP + H2O <=> GMP + Orthophosphate	GDP phosphohydrolase
R00330	ATP + GDP <=> ADP + GTP	ATP:GDP phosphotransferase
R00332	ATP + GMP <=> ADP + GDP	ATP:GMP phosphotransferase
R00335	GTP + H2O <=> GDP + Orthophosphate	GTP phosphohydrolase
R00336	Guanosine 3',5'-bis(diphosphate) + H2O <=> GDP + Diphosphate	guanosine-3',5'-bis(diphosphate) 3'-diphosphohydrolase
R00430	GTP + Pyruvate <=> GDP + Phosphoenolpyruvate	GTP:pyruvate 2-O-phosphotransferase
R02019	dGDP + Thioredoxin disulfide + H2O <=> GDP + Thioredoxin	2'-Deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase

Table of KEGG human pathways containing GDP

Pathway ID	Human Pathway	# of reactions
hsa00230	Purine metabolism	7