RefMet Compound Details

MW structure35552 (View MW Metabolite Database details)
RefMet nameVitamin D3
Systematic name(1S,3Z)-3-{2-[(1R,4E,7aR)-7a-methyl-1-[(2R)-6-methylheptan-2-yl]-octahydro-1H-inden-4-ylidene]ethylidene}-4-methylidenecyclohexan-1-ol
SMILESCC(C)CCC[C@@H](C)[C@H]1CC[C@H]2/C(=C/C=C\3/C[C@H](CCC3=C)O)/CCC[C@]12C   Run Tanimoto similarity search (with similarity coefficient >=0.6)
Exact mass384.339215 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC27H44OView other entries in RefMet with this formula
InChIInChI=1S/C27H44O/c1-19(2)8-6-9-21(4)25-15-16-26-22(10-7-17-27(25,26)5)12-13-23-18-24(28)14-11-20(23)3/h12-13,19,21,24-26,28H,3,6-1
1,14-18H2,1-2,4-5H3/b22-12+,23-13-/t21-,24+,25-,26+,27-/m1/s1
InChIKeyQYSXJUFSXHHAJI-YRZJJWOYSA-NView other enantiomers/diastereomers of this metabolite in RefMet
Super ClassSterol Lipids
Main ClassSecosterols
Sub ClassVitamin D3
Pubchem CID5280795
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving Vitamin D3

Rxn IDKEGG ReactionEnzyme
R11458 Vitamin D3 + Oxygen + 2 Reduced ferredoxin + 2 H+ <=> Calcidiol + 2 Oxidized ferredoxin + H2Ocalciol,ferredoxin:oxygen oxidoreductase (1,25-hydroxylating)
R03611 Calcidiol + [Oxidized NADPH---hemoprotein reductase] + H2O <=> Vitamin D3 + [Reduced NADPH---hemoprotein reductase] + Oxygencalciol,NADPH-hemoprotein reductase:oxygen oxidoreductase (25-hydroxylating)

Table of KEGG human pathways containing Vitamin D3

Pathway IDHuman Pathway# of reactions
hsa00100 Steroid biosynthesis 1
hsa01100 Metabolic pathways 1
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