RefMet Compound Details

RefMet ID	RM0009096
MW structure	37523 (View MW Metabolite Database details)
RefMet name	dGDP
Systematic name	[({[(2R,3S,5R)-5-(2-amino-6-oxo-6,9-dihydro-1H-purin-9-yl)-3-hydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid
SMILES	C1[C@@H]([C@@H](COP(=O)(O)OP(=O)(O)O)O[C@H]1n1cnc2c1nc(N)[nH]c2=O)O   Run Tanimoto similarity search (with similarity coefficient >=0.6)
Exact mass	427.029421 (neutral)	Calculate m/z: (Choose adduct) [M+H]+ [M+H-H2O]+ [M.]+ [M+2H]2+ [M+3H]3+ [M+4H]4+ [M+K]+ [M+2K]2+ [M+2K-H]+ [M+Na]+ [M+2Na]2+ [M+2Na-H]+ [M+Li]+ [M+2Li]2+ [M+NH4]+ [M.CH3]+ [M+Ag]+ [M+H+CH3OH]+ [M+H+CH3CN]+ [M+H+2CH3CN]+ [M+Na+CH3CN]+ [M.NaFormate+H]+ [M.NH4Formate+H]+ [M.TMSi]+ [M.tBuDMSi]+ [M+H-Hexose]+ [M+H-EtnP]+ [M+H-SerP]+ [M-H]- [M-H-H2O]- [M-CH3]- [M-2H]2- [M-3H]3- [M-4H]4- [M+Cl]- [M+OAc]- [M+Na-2H]- [M+K-2H]- [M.Formate]- [M.NaFormate-H]- [M.NH4Formate-H]- [M.F]- [M-H-Ser]- [M.HF2]- M(neutral)    View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
Formula	C10H15N5O10P2	View other entries in RefMet with this formula
InChI	InChI=1S/C10H15N5O10P2/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(24-6)2-23-27(21,22)25-26(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H2 ,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1
InChIKey	CIKGWCTVFSRMJU-KVQBGUIXSA-N	View other enantiomers/diastereomers of this metabolite in RefMet
Super Class	Nucleic acids
Main Class	Purines
Sub Class	Purine dNDP
Pubchem CID	135398595
ChEBI ID	28862
Annotation level	1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)

Table of KEGG reactions in human pathways involving dGDP

Rxn ID	KEGG Reaction	Enzyme
R01857	ATP + dGDP <=> ADP + dGTP	ATP:dGDP phosphotransferase
R01858	dGTP + Pyruvate <=> dGDP + Phosphoenolpyruvate	dGTP:pyruvate 2-O-phosphotransferase
R02019	dGDP + Thioredoxin disulfide + H2O <=> GDP + Thioredoxin	2'-Deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase
R02090	ATP + dGMP <=> ADP + dGDP	ATP:dGMP phosphotransferase

Table of KEGG human pathways containing dGDP

Pathway ID	Human Pathway	# of reactions
hsa00230	Purine metabolism	4