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MB Sample ID: SA005499
| Local Sample ID: | HSP_ms2_pos.raw |
| Subject ID: | SU000117 |
| Subject Type: | Invertebrate |
| Subject Species: | Caenorhabditis elegans |
| Taxonomy ID: | 6239 |
| Genotype Strain: | N2 |
| Species Group: | Invertebrate |
Select appropriate tab below to view additional metadata details:
Subject:
| Subject ID: | SU000117 |
| Subject Type: | Invertebrate |
| Subject Species: | Caenorhabditis elegans |
| Taxonomy ID: | 6239 |
| Genotype Strain: | N2 |
| Species Group: | Invertebrate |
Factors:
| Local Sample ID | MB Sample ID | Factor Level ID | Level Value | Factor Name |
|---|---|---|---|---|
| HSP_ms2_pos.raw | SA005499 | FL001376 | Unfractionated | Fractionation |
Collection:
| Collection ID: | CO000100 |
| Collection Summary: | Samples were already collected. |
| Collection Protocol Filename: | NMR_Methods.docx LCMSMethod.docx |
| Sample Type: | Worms |
Treatment:
| Treatment ID: | TR000118 |
| Treatment Summary: | No further treatment |
Sample Preparation:
| Sampleprep ID: | SP000113 |
| Sampleprep Summary: | Samples were mixed together and resuspended in 120 ?L of water. |
| Sampleprep Protocol Filename: | NMR_Methods.docx LCMSMethod.docx |
Analysis:
| MB Sample ID: | SA005499 |
| Analysis ID: | AN000162 |
| Laboratory Name: | Arthur Edison |
| Analysis Type: | NMR |
| Analysis Comments: | Carbon 1D dataset was all collected using the custom 1.5 mm HTS prob |
| Software Version: | VNMRJ |
| Operator Name: | Chaevien Clendinen |
| Randomization Order: | NMR/Processed |
| Data Format: | Varian FID |
| Chromatography ID: | CH000112 |
| Num Factors: | 3 |
| MB Sample ID: | SA005499 |
| Analysis ID: | AN000161 |
| Laboratory Name: | Arthur Edison |
| Analysis Type: | NMR |
| Analysis Comments: | HSQC-TOCSY dataset was collected using the custom 1.5 mm HTS prob |
| Software Version: | VNMRJ |
| Operator Name: | Chaevien Clendinen |
| Randomization Order: | NMR/Processed |
| Data Format: | Varian FID |
| Chromatography ID: | CH000112 |
| Num Factors: | 3 |
| MB Sample ID: | SA005499 |
| Analysis ID: | AN000157 |
| Laboratory Name: | Timothy Garrett |
| Analysis Type: | MS |
| Analysis Comments: | Samples were analyzed using a mass range of 70-1000 in positive and negative ionization modes, externally calibrated, using a Thermo Scientific Q-Exactive Orbitrap mass spectrometer equipped with a Dionex UltiMate 3000 RS autosampler and pump. The Q-Exactive was equipped with a Heated Electrospray Ionization (HESI) source which operated at a spray temperature of 350 ?C, a spray voltage of 3.5 kV, and sheath and auxiliary gas flow rates of 50 and 10 arbitrary units, respectively. The capillary temperature was held at 325 ?C, and the S-lens RF Level was set to 40%. The FR resolution was set to 70,000 at m/z 200. The accuracy achieved was routinely less than 1.5 ppm. In addition to full MS, data-dependent MS/MS was performed on the 10 most abundance peaks with an exclusion period of 10 seconds (40 normalized collision energy). Fractionation was performed using a Dionex UltiMate 3000 fraction collector by triggering every 30 seconds. |
| Instrument Name: | Thermo Scientific Q-Exactive |
| Operator Name: | Timothy Garrett |
| Detector Type: | Thermo Scientific Q-Exactive Orbitrap/MS Positive |
| Chromatography ID: | CH000112 |
| Num Factors: | 3 |
| MB Sample ID: | SA005499 |
| Analysis ID: | AN000160 |
| Laboratory Name: | Arthur Edison |
| Analysis Type: | NMR |
| Analysis Comments: | HSQC dataset was collected using the custom 1.5 mm HTS probe |
| Software Version: | VNMRJ |
| Operator Name: | Chaevien Clendinen |
| Randomization Order: | NMR/Processed |
| Data Format: | Varian FID |
| Chromatography ID: | CH000112 |
| Num Factors: | 3 |
| MB Sample ID: | SA005499 |
| Analysis ID: | AN000159 |
| Laboratory Name: | Timothy Garrett |
| Analysis Type: | MS |
| Analysis Comments: | Samples were analyzed using a mass range of 70-1000 in positive and negative ionization modes, externally calibrated, using a Thermo Scientific Q-Exactive Orbitrap mass spectrometer equipped with a Dionex UltiMate 3000 RS autosampler and pump. The Q-Exactive was equipped with a Heated Electrospray Ionization (HESI) source which operated at a spray temperature of 350 ?C, a spray voltage of 3.5 kV, and sheath and auxiliary gas flow rates of 50 and 10 arbitrary units, respectively. The capillary temperature was held at 325 ?C, and the S-lens RF Level was set to 40%. The FR resolution was set to 70,000 at m/z 200. The accuracy achieved was routinely less than 1.5 ppm. In addition to full MS, data-dependent MS/MS was performed on the 10 most abundance peaks with an exclusion period of 10 seconds (40 normalized collision energy). Fractionation was performed using a Dionex UltiMate 3000 fraction collector by triggering every 30 seconds. |
| Instrument Name: | Thermo Scientific Q-Exactive |
| Operator Name: | Timothy Garrett |
| Detector Type: | Thermo Scientific Q-Exactive Orbitrap/MS2 Negative |
| Chromatography ID: | CH000112 |
| Num Factors: | 3 |
| MB Sample ID: | SA005499 |
| Analysis ID: | AN000158 |
| Laboratory Name: | Timothy Garrett |
| Analysis Type: | MS |
| Analysis Comments: | Samples were analyzed using a mass range of 70-1000 in positive and negative ionization modes, externally calibrated, using a Thermo Scientific Q-Exactive Orbitrap mass spectrometer equipped with a Dionex UltiMate 3000 RS autosampler and pump. The Q-Exactive was equipped with a Heated Electrospray Ionization (HESI) source which operated at a spray temperature of 350 ?C, a spray voltage of 3.5 kV, and sheath and auxiliary gas flow rates of 50 and 10 arbitrary units, respectively. The capillary temperature was held at 325 ?C, and the S-lens RF Level was set to 40%. The FR resolution was set to 70,000 at m/z 200. The accuracy achieved was routinely less than 1.5 ppm. In addition to full MS, data-dependent MS/MS was performed on the 10 most abundance peaks with an exclusion period of 10 seconds (40 normalized collision energy). Fractionation was performed using a Dionex UltiMate 3000 fraction collector by triggering every 30 seconds. |
| Instrument Name: | Thermo Scientific Q-Exactive |
| Operator Name: | Timothy Garrett |
| Detector Type: | Thermo Scientific Q-Exactive Orbitrap/MS2 Positive |
| Chromatography ID: | CH000112 |
| Num Factors: | 3 |
NMR:
| NMR ID: | NM000029 |
| Analysis ID: | AN000160 |
| Instrument Name: | Agilent VNMRS-600 |
| Instrument Type: | FT-NMR |
| NMR Experiment Type: | 2D 1H-13C HSQC |
| Spectrometer Frequency: | 600 MHz |
| NMR Probe: | custome 1.5 mm HTS probe |
| NMR Solvent: | D2O |
| NMR Tube Size: | 1.5 mm |
| Pulse Width: | 90d |
| Power Level: | 37 |
| Offset Frequency: | 4.77 |
| Temperature: | 23d |
| Number Of Scans: | 32 |
| Dummy Scans: | 16 |
| Acquisition Time: | 0.14 |
| Relaxation Delay: | 1.5 sec |
| Spectral Width: | 12 ppm ; 205.5 ppm |
| Num Data Points Acquired: | 2048 |
| Real Data Points: | 1024 |
| Line Broadening: | 2 |
| Zero Filling: | 2x |
| Apodization: | EM |
| Baseline Correction Method: | POLY |
| NMR ID: | NM000030 |
| Analysis ID: | AN000161 |
| Instrument Name: | Agilent VNMRS-600 |
| Instrument Type: | FT-NMR |
| NMR Experiment Type: | 2D 1H-13C HSQC-TOCSY |
| Spectrometer Frequency: | 600 MHz |
| NMR Probe: | custome 1.5 mm HTS probe |
| NMR Solvent: | D2O |
| NMR Tube Size: | 1.5 mm |
| Pulse Width: | 90d |
| Power Level: | 37 |
| Offset Frequency: | 4.77 |
| Temperature: | 23d |
| Number Of Scans: | 96 |
| Dummy Scans: | 16 |
| Acquisition Time: | 0.14 |
| Relaxation Delay: | 1.5 sec |
| Spectral Width: | 13 ppm ; 205.5 ppm/14 ppm ; 205.5 ppm |
| Num Data Points Acquired: | 2048 |
| Real Data Points: | 1024 |
| Line Broadening: | 2 |
| Zero Filling: | 2x |
| Apodization: | EM |
| Baseline Correction Method: | POLY |
| NMR ID: | NM000031 |
| Analysis ID: | AN000162 |
| Instrument Name: | Agilent VNMRS-600 |
| Instrument Type: | FT-NMR |
| NMR Experiment Type: | 1D 13C |
| Spectrometer Frequency: | 600 MHz |
| NMR Probe: | custome 1.5 mm HTS probe |
| NMR Solvent: | D2O |
| NMR Tube Size: | 1.5 mm |
| Pulse Width: | 60d |
| Power Level: | 57 |
| Temperature: | 23d |
| Number Of Scans: | 512 |
| Dummy Scans: | 16 |
| Relaxation Delay: | 2 sec |
| Spectral Width: | 212 ppm |
| Num Data Points Acquired: | 96154 |
| Real Data Points: | 48077 |
| Line Broadening: | 5 |
| Zero Filling: | 2x |
| Apodization: | EM |
| Baseline Correction Method: | POLY |
