Summary of Study ST000969
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000664. The data can be accessed directly via it's Project DOI: 10.21228/M8V68R This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST000969 |
| Study Title | Impact of thiamine metabolites and spent medium from Chlorella sorokiniana on metabolism in the green algae Auxenochlorella prototheciodes (part II) |
| Study Summary | The purpose of this study is to determine how thiamine metabolites impact central metabolism in Auxenochlorella protothecoides when grown in the presence of glucose. We hypothesize that thiamine metabolites alleviate bottlenecks in the TCA cycle and gluconeogensis, thus allowing for greater starch production when they are present. Cells were grown in bioreactors: 3 control cultures with no thiamine metabolites, 3 cultures received thiamine, 3 recieved HMP, and 3 were grown on residual medium from another algae species - Chlorella sorokiniana. We suspect that this residual medium also contains thiamine metabolites. Samples were taken daily from each of these 12 cultures over a 5 day time course so that we can observe build-up of metabolites over time. |
| Institute | University of California, Davis |
| Department | Genome and Biomedical Sciences Facility |
| Laboratory | WCMC Metabolomics Core |
| Last Name | Fiehn |
| First Name | Oliver |
| Address | 1315 Genome and Biomedical Sciences Facility, 451 Health Sciences Drive, Davis, CA 95616 |
| ofiehn@ucdavis.edu | |
| Phone | (530) 754-8258 |
| Submit Date | 2018-05-03 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | cdf |
| Analysis Type Detail | GC-MS |
| Release Date | 2018-06-05 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Cultured cells; Subject species: Auxenochlorella protothecoides (Factor headings shown in green)
| mb_sample_id | local_sample_id | Treatment |
|---|---|---|
| SA057920 | 161115aZKsa47_1 | 1 - Control |
| SA057921 | 161115aZKsa43_1 | 1 - Control |
| SA057922 | 161116aZKsa08_2 | 1 - Control |
| SA057923 | 161116aZKsa22_2 | 1 - Control |
| SA057924 | 161115aZKsa10_1 | 1 - Control |
| SA057925 | 161115aZKsa04_1 | 1 - Control |
| SA057926 | 161116aZKsa06_2 | 1 - Control |
| SA057927 | 161116aZKsa14_2 | 1 - Control |
| SA057928 | 161115aZKsa07_1 | 1 - Control |
| SA057929 | 161115aZKsa49_1 | 1 - Control |
| SA057930 | 161115aZKsa39_1 | 1 - Control |
| SA057931 | 161115aZKsa17_1 | 1 - Control |
| SA057932 | 161116aZKsa17_1 | 1 - Control |
| SA057933 | 161115aZKsa28_1 | 1 - Control |
| SA057934 | 161115aZKsa08_1 | 1 - Control |
| SA057935 | 161116aZKsa03_2 | 1 - Control |
| SA057936 | 161115aZKsa13_1 | 1 - Control |
| SA057937 | 161115aZKsa31_1 | 1 - Control |
| SA057938 | 161115aZKsa25_1 | 2 - HMP |
| SA057939 | 161116aZKsa05_2 | 2 - HMP |
| SA057940 | 161115aZKsa22_1 | 2 - HMP |
| SA057941 | 161115aZKsa24_1 | 2 - HMP |
| SA057942 | 161116aZKsa16_1 | 2 - HMP |
| SA057943 | 161115aZKsa40_1 | 2 - HMP |
| SA057944 | 161116aZKsa09_2 | 2 - HMP |
| SA057945 | 161115aZKsa29_1 | 2 - HMP |
| SA057946 | 161115aZKsa12_1 | 2 - HMP |
| SA057947 | 161115aZKsa03_1 | 2 - HMP |
| SA057948 | 161116aZKsa02_2 | 2 - HMP |
| SA057949 | 161116aZKsa12_3 | 2 - HMP |
| SA057950 | 161115aZKsa05_1 | 2 - HMP |
| SA057951 | 161115aZKsa15_1 | 2 - HMP |
| SA057952 | 161116aZKsa10_2 | 2 - HMP |
| SA057953 | 161115aZKsa50_1 | 2 - HMP |
| SA057954 | 161115aZKsa27_1 | 2 - HMP |
| SA057955 | 161115aZKsa01_1 | 2 - HMP |
| SA057956 | 161116aZKsa21_1 | 3 - Residual |
| SA057957 | 161116aZKsa04_2 | 3 - Residual |
| SA057958 | 161115aZKsa45_1 | 3 - Residual |
| SA057959 | 161115aZKsa19_1 | 3 - Residual |
| SA057960 | 161115aZKsa32_1 | 3 - Residual |
| SA057961 | 161115aZKsa02_1 | 3 - Residual |
| SA057962 | 161115aZKsa23_1 | 3 - Residual |
| SA057963 | 161115aZKsa41_1 | 3 - Residual |
| SA057964 | 161116aZKsa01_2 | 3 - Residual |
| SA057965 | 161115aZKsa30_1 | 3 - Residual |
| SA057966 | 161116aZKsa07_2 | 3 - Residual |
| SA057967 | 161116aZKsa11_3 | 3 - Residual |
| SA057968 | 161116aZKsa20_1 | 3 - Residual |
| SA057969 | 161115aZKsa36_1 | 3 - Residual |
| SA057970 | 161115aZKsa37_1 | 3 - Residual |
| SA057971 | 161115aZKsa26_1 | 3 - Residual |
| SA057972 | 161115aZKsa11_1 | 3 - Residual |
| SA057973 | 161115aZKsa46_1 | 3 - Residual |
| SA057974 | 161116aZKsa18_1 | 4 - Thiamine |
| SA057975 | 161115aZKsa38_1 | 4 - Thiamine |
| SA057976 | 161115aZKsa09_1 | 4 - Thiamine |
| SA057977 | 161115aZKsa48_1 | 4 - Thiamine |
| SA057978 | 161115aZKsa20_1 | 4 - Thiamine |
| SA057979 | 161115aZKsa34_1 | 4 - Thiamine |
| SA057980 | 161115aZKsa35_1 | 4 - Thiamine |
| SA057981 | 161116aZKsa13_1 | 4 - Thiamine |
| SA057982 | 161115aZKsa33_1 | 4 - Thiamine |
| SA057983 | 161115aZKsa42_1 | 4 - Thiamine |
| SA057984 | 161115aZKsa18_1 | 4 - Thiamine |
| SA057985 | 161115aZKsa44_1 | 4 - Thiamine |
| SA057986 | 161115aZKsa14_1 | 4 - Thiamine |
| SA057987 | 161115aZKsa16_1 | 4 - Thiamine |
| SA057988 | 161115aZKsa21_1 | 4 - Thiamine |
| SA057989 | 161115aZKsa06_1 | 4 - Thiamine |
| SA057990 | 161116aZKsa15_2 | 4 - Thiamine |
| SA057991 | 161116aZKsa19_1 | 4 - Thiamine |
| Showing results 1 to 72 of 72 |
