Summary of Study ST001649
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001055. The data can be accessed directly via it's Project DOI: 10.21228/M8B70D This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST001649 |
| Study Title | Urinary microbiota and metabolome in pediatric vesicoureteral reflux and scarring |
| Study Type | Observational/cross-sectional |
| Study Summary | We enrolled girls and boys aged zero to nine years presenting to a pediatric urologist for recurrent urinary tract infection (UTI) or renal scarring (decreased uptake on a nuclear renal scan) or grade 3-5 vesico ureteral reflux (VUR). Exclusion criteria included other urogenital abnormalities, medical renal disease, immunodeficiency, syndromes associated with VUR, acute UTI, persistent UTI (ongoing positive urine culture 1-3 weeks after completing a treatment course), or global renal atrophy on imaging. At one patient visit, a urine specimen was collected for 16S and metabolomic analysis. |
| Institute | University of Missouri-Columbia |
| Department | MU Metabolomics Center |
| Last Name | Sarma |
| First Name | Saurav |
| Address | 1201 Rollins street, Bond Life Science Center |
| sarmas@missouri.edu | |
| Phone | 5738825596 |
| Submit Date | 2021-01-01 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | cdf |
| Analysis Type Detail | GC-MS |
| Release Date | 2021-01-25 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
| Analysis ID | AN002695 |
|---|---|
| Analysis type | MS |
| Chromatography type | GC |
| Chromatography system | Agilent 6890N |
| Column | DB-5MS (J&W Scientific) 60m |
| MS Type | EI |
| MS instrument type | Single quadrupole |
| MS instrument name | Agilent 5973 |
| Ion Mode | POSITIVE |
| Units | Intensity |
MS:
| MS ID: | MS002493 |
| Analysis ID: | AN002695 |
| Instrument Name: | Agilent 5973 |
| Instrument Type: | Single quadrupole |
| MS Type: | EI |
| MS Comments: | Agilent Chem Station software used for data acquisition, Enhanced Data Analysis software used for converting data to .cdf file, AMDIS was used for peak deconvolution and NIST17 GCMS library was used for compound identification. |
| Ion Mode: | POSITIVE |
| Helium Flow: | 1mL/min |
| Ion Source Temperature: | 230C |
| Ionization Energy: | 70ev |
| Reagent Gas: | Helium |
| Source Temperature: | 230C |
| Dataformat: | .d |
