Summary of Study ST000273
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000217. The data can be accessed directly via it's Project DOI: 10.21228/M8BP4D This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
| Study ID | ST000273 |
| Study Title | Short-chain fatty acid analysis in bronchoalveolar lavage fluid (BAL SCFA) |
| Study Type | We will correlate the bacterial gene abundance with the metabolite concentration |
| Study Summary | The study is intended to find if correlation exists between the abundance of bacterial gene for pyruvate ferredoxin oxidoreductase (PFOR) and short-chain fatty acids concentration in bronchoalveolar lavage fluid from patients with HIV-Associated Bacterial Pneumonia. |
| Institute | University of Michigan; New York University |
| Department | Pulmonary Medicine |
| Laboratory | Weiden Lab(New York University School of Medicine) |
| Last Name | Weiden |
| First Name | Michael |
| Address | New York |
| michael.weiden@nyumc.org | |
| Phone | 212-263-6479 |
| Submit Date | 2014-03-26 |
| Num Groups | 2 |
| Total Subjects | 39 |
| Study Comments | PFOR stands for pyruvate ferredoxin oxidoreductase gene |
| Raw Data File Type(s) | d |
| Analysis Type Detail | GC-MS |
| Release Date | 2016-01-06 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
| Project ID: | PR000217 |
| Project DOI: | doi: 10.21228/M8BP4D |
| Project Title: | Longitudinal Studies of HIV-Associated Bacterial Pneumonia |
| Project Summary: | SCFA metabolites, increased Treg, reduced Th17 lymphocytes and blunted immune response ex vivo |
| Institute: | New York University |
| Department: | Pulmonary Medicine |
| Laboratory: | Weiden Lab |
| Last Name: | Weiden |
| First Name: | Michael |
| Address: | New York |
| Email: | michael.weiden@nyumc.org |
| Phone: | 212-263-6479 |
Subject:
| Subject ID: | SU000293 |
| Subject Type: | Human |
| Subject Species: | Homo sapiens |
| Taxonomy ID: | 9606 |
| Species Group: | Human |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
| mb_sample_id | local_sample_id | PFOR level |
|---|---|---|
| SA012166 | S00013202 | High |
| SA012167 | S00013203 | High |
| SA012168 | S00013204 | High |
| SA012169 | S00013201 | High |
| SA012170 | S00013200 | High |
| SA012171 | S00013197 | High |
| SA012172 | S00013198 | High |
| SA012173 | S00013199 | High |
| SA012174 | S00013205 | High |
| SA012175 | S00013206 | High |
| SA012176 | S00013212 | High |
| SA012177 | S00013213 | High |
| SA012178 | S00013214 | High |
| SA012179 | S00013211 | High |
| SA012180 | S00013210 | High |
| SA012181 | S00013207 | High |
| SA012182 | S00013208 | High |
| SA012183 | S00013209 | High |
| SA012184 | S00013196 | High |
| SA012185 | S00013195 | High |
| SA012186 | S00013190 | High |
| SA012187 | S00013188 | High |
| SA012188 | S00013191 | High |
| SA012189 | S00013189 | High |
| SA012190 | S00013194 | High |
| SA012191 | S00013193 | High |
| SA012192 | S00013192 | High |
| SA012193 | S00013180 | Low |
| SA012194 | S00013181 | Low |
| SA012195 | S00013179 | Low |
| SA012196 | S00013177 | Low |
| SA012197 | S00013182 | Low |
| SA012198 | S00013178 | Low |
| SA012199 | S00013186 | Low |
| SA012200 | S00013187 | Low |
| SA012201 | S00013176 | Low |
| SA012202 | S00013185 | Low |
| SA012203 | S00013184 | Low |
| SA012204 | S00013183 | Low |
| Showing results 1 to 39 of 39 |
Collection:
| Collection ID: | CO000287 |
| Collection Summary: | -- |
| Sample Type: | Bronchoalveolar Lavage Fluid |
Treatment:
| Treatment ID: | TR000307 |
Sample Preparation:
| Sampleprep ID: | SP000301 |
| Sampleprep Summary: | -- |
| Sampleprep Protocol Filename: | SCFA_analysis_protocol-2015-03-10.docx |
Combined analysis:
| Analysis ID | AN000436 |
|---|---|
| Analysis type | MS |
| Chromatography type | GC |
| Chromatography system | -- |
| Column | Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um) |
| MS Type | EI |
| MS instrument type | Single quadrupole |
| MS instrument name | Agilent 5975C |
| Ion Mode | POSITIVE |
| Units |
Chromatography:
| Chromatography ID: | CH000305 |
| Chromatography Summary: | -- |
| Methods ID: | AQM030 |
| Methods Filename: | WAXPLUS_100-200C_2_SIM.M.txt |
| Instrument Name: | -- |
| Column Name: | Phenomenex Zebron ZB-WAXplus (30m x 0.25mm,0.25um) |
| Column Temperature: | -- |
| Flow Gradient: | -- |
| Flow Rate: | -- |
| Solvent A: | -- |
| Solvent B: | -- |
| Chromatography Type: | GC |
MS:
| MS ID: | MS000377 |
| Analysis ID: | AN000436 |
| Instrument Name: | Agilent 5975C |
| Instrument Type: | Single quadrupole |
| MS Type: | EI |
| Ion Mode: | POSITIVE |
| Acquisition Parameters File: | WAXPLUS_100-200C_2_SIM.M.txt |
| Processing Parameters File: | EX00259-SCFA-Quant-methods.m.zip |
