Summary of Study ST003364
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR002090. The data can be accessed directly via it's Project DOI: 10.21228/M8G24F This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST003364 |
Study Title | Deep lipidomic profiling reveals sex dimorphism of lipid metabolism in fibro-calcific aortic valve disease |
Study Summary | In-depth lipidomics profiling was performed on human tricuspid and bicuspid aortic valve tissue at different pathological stages, including mildly diseased, fibrotic and calcific tissue sections. Untargeted and targeted analysis were employed to enable high identification coverage and accurate quantification of lipids. Chromatographic separation modes (C18 RPC, C30 RPC) was combined with MS analysis using various acquisition modes (full MS, DDA, SRM) to allow for the identification of 1084 lipid molecular species across 28 lipid subclasses, of which 480 lipids were semi-absolutely quantified. |
Institute | Technical University Dresden |
Last Name | Fedorova |
First Name | Maria |
Address | Tatzberg 47/49, Dresden, Saxony, 01307, Germany |
maria.fedorova@tu-dresden.de | |
Phone | +49 351 796 36617 |
Submit Date | 2024-07-18 |
Raw Data Available | Yes |
Raw Data File Type(s) | mzML |
Analysis Type Detail | LC-MS |
Release Date | 2024-08-15 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Project:
Project ID: | PR002090 |
Project DOI: | doi: 10.21228/M8G24F |
Project Title: | Deep lipidomic profiling reveals sex dimorphism of lipid metabolism in fibro-calcific aortic valve disease |
Project Summary: | In-depth lipidomics profiling was performed on human tricuspid and bicuspid aortic valve tissue at different pathological stages, including mildly diseased, fibrotic and calcific tissue sections. Untargeted and targeted analysis were employed to enable high identification coverage and accurate quantification of lipids. Chromatographic separation modes (C18 RPC, C30 RPC) was combined with MS analysis using various acquisition modes (full MS, DDA, SRM) to allow for the identification of 1084 lipid molecular species across 28 lipid subclasses, of which 480 lipids were semi-absolutely quantified. |
Institute: | Technical University Dresden |
Last Name: | Fedorova |
First Name: | Maria |
Address: | Tatzberg 47/49, Dresden, Saxony, 01307, Germany |
Email: | maria.fedorova@tu-dresden.de |
Phone: | +49 351 796 36617 |
Subject:
Subject ID: | SU003485 |
Subject Type: | Human |
Subject Species: | Homo sapiens |
Taxonomy ID: | 9606 |
Factors:
Subject type: Human; Subject species: Homo sapiens (Factor headings shown in green)
mb_sample_id | local_sample_id | Sample source | Analysis method | Extraction method | Morphology | Sex | Pathology |
---|---|---|---|---|---|---|---|
SA366398 | A_cal1_1.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366399 | A_cal1_3.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366400 | A_cal1_2.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366401 | A_cal1_2.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366402 | A_cal1_2.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366403 | A_cal1_1.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366404 | A_cal_tQC3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366405 | A_cal1_1.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366406 | A_cal1_0.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366407 | A_cal1_0.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366408 | A_cal1_0.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366409 | A_cal_tQC2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366410 | A_cal_tQC1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366411 | A_cal1_3.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366412 | A_cal1_3.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366413 | A_cal1_5.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366414 | A_cal1_4.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366415 | A_cal2_2.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366416 | A_cal2_6.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366417 | A_cal2_6.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366418 | A_cal2_6.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366419 | A_cal2_5.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366420 | A_cal2_5.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366421 | A_cal2_5.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366422 | A_cal2_4.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366423 | A_cal2_4.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366424 | A_cal2_4.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366425 | A_cal2_3.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366426 | A_cal2_3.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366427 | A_cal2_2.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366428 | A_cal2_2.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366429 | A_cal1_4.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366430 | A_cal2_1.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366431 | A_cal2_1.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366432 | A_cal2_1.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366433 | A_cal2_0.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366434 | A_cal2_0.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366435 | A_cal2_0.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366436 | A_cal1_6.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366437 | A_cal1_6.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366438 | A_cal1_6.1 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366439 | A_cal1_5.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366440 | A_cal1_5.2 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366441 | A_cal1_4.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366442 | A_cal2_3.3 | Aortic valve tissue | acidified MeOH/CHCl3 extraction and targeted SRM | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366033 | A_POST_pool_3.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366034 | A_PRE_pool_3.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366035 | A_POST_pool_3.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366036 | A_POST_pool_2.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366037 | A_POST_pool_2.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366038 | A_POST_pool_2.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366039 | A_POST_pool_1.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366040 | A_POST_pool_1.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366041 | A_POST_pool_1.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366042 | A_PRE_pool_3.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366043 | A_PRE_pool_0.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366044 | A_PRE_pool_3.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366045 | A_PRE_pool_2.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366046 | A_PRE_pool_2.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366047 | A_PRE_pool_2.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366048 | A_PRE_pool_1.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366049 | A_PRE_pool_1.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366050 | A_PRE_pool_1.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366051 | A_PRE_pool_0.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366052 | A_POST_pool_3.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366053 | A_PRE_pool_0.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | acidified MeOH/CHCl3 | mixed | mixed | mixed |
SA366012 | F_PRE_pool_3.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366013 | F_PRE_pool_0.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366014 | F_PRE_pool_1.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366015 | F_PRE_pool_1.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366016 | F_PRE_pool_1.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366017 | F_PRE_pool_2.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366018 | F_PRE_pool_2.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366019 | F_PRE_pool_3.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366020 | F_PRE_pool_3.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366021 | F_POST_pool_1.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366022 | F_PRE_pool_0.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366023 | F_POST_pool_1.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366024 | F_POST_pool_1.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366025 | F_POST_pool_2.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366026 | F_POST_pool_2.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366027 | F_POST_pool_2.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366028 | F_POST_pool_3.1 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366029 | F_POST_pool_3.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366030 | F_POST_pool_3.3 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366031 | F_PRE_pool_0.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366032 | F_PRE_pool_2.2 | Aortic valve tissue | Assessment of PA and LPA recovery rates | Folch | mixed | mixed | mixed |
SA366054 | F_cal-p_3.1 | Aortic valve tissue | Folch extraction and untargeted MS10 | Folch | mixed | mixed | mixed |
SA366055 | F_cal-p_3.2 | Aortic valve tissue | Folch extraction and untargeted MS11 | Folch | mixed | mixed | mixed |
SA366056 | F_cal-p_3.3 | Aortic valve tissue | Folch extraction and untargeted MS12 | Folch | mixed | mixed | mixed |
SA366057 | F_cal-p_4.1 | Aortic valve tissue | Folch extraction and untargeted MS13 | Folch | mixed | mixed | mixed |
SA366058 | F_cal-p_4.2 | Aortic valve tissue | Folch extraction and untargeted MS14 | Folch | mixed | mixed | mixed |
SA366059 | F_cal-p_4.3 | Aortic valve tissue | Folch extraction and untargeted MS15 | Folch | mixed | mixed | mixed |
SA366060 | F_cal-p_5.1 | Aortic valve tissue | Folch extraction and untargeted MS16 | Folch | mixed | mixed | mixed |
SA366061 | F_cal-p_5.2 | Aortic valve tissue | Folch extraction and untargeted MS17 | Folch | mixed | mixed | mixed |
SA366062 | F_cal-p_5.3 | Aortic valve tissue | Folch extraction and untargeted MS18 | Folch | mixed | mixed | mixed |
SA366063 | F_cal-p_6.1 | Aortic valve tissue | Folch extraction and untargeted MS19 | Folch | mixed | mixed | mixed |
SA366064 | F_cal-p_0.1 | Aortic valve tissue | Folch extraction and untargeted MS1 | Folch | mixed | mixed | mixed |
SA366065 | F_cal-p_6.2 | Aortic valve tissue | Folch extraction and untargeted MS20 | Folch | mixed | mixed | mixed |
SA366066 | F_cal-p_6.3 | Aortic valve tissue | Folch extraction and untargeted MS21 | Folch | mixed | mixed | mixed |
Collection:
Collection ID: | CO003478 |
Collection Summary: | CAVD tissues were obtained from 55 patients undergoing aortic valve replacement for severe aortic stenosis. For all human tissue samples used in this study, tissue collection was approved by the local Ethical Committee (Medical Faculty, University Leipzig, registration number 128/19-ek) and all patients gave written informed consent in accordance with the Declaration of Helsinki. All samples showed macroscopic calcification as a sign of progressed FCAVD. Tissue samples were dissected into mildly diseased, fibrotic and calcific pieces on-site and flash frozen in liquid nitrogen. The deep frozen tissue sections were crushed into a thin powder in a percussion mortar in liquid nitrogen and stored at -80°C until further analysis. |
Sample Type: | Aortic valve tissue |
Collection Location: | Leipzig, Germany |
Storage Conditions: | -80? |
Storage Vials: | Plastic tubes |
Additives: | none |
Treatment:
Treatment ID: | TR003494 |
Treatment Summary: | NA |
Sample Preparation:
Sampleprep ID: | SP003492 |
Sampleprep Summary: | Aortic valve tissue was spiked with tailored mixtures of internal standards and lipids were extracted either using the Folch method or by acidified MeOH/CHCl3 lipid extraction. |
Processing Storage Conditions: | 4? |
Extraction Method: | Folch lipid extraction or acidified MeOH/CHCl3 lipid extraction |
Extract Storage: | -80? |
Sample Derivatization: | none |
Sample Spiking: | aortic valve tissue specific internal standard mix |
Combined analysis:
Analysis ID | AN005510 | AN005511 | AN005512 | AN005513 |
---|---|---|---|---|
Analysis type | MS | MS | MS | MS |
Chromatography type | Reversed phase | Reversed phase | Reversed phase | Reversed phase |
Chromatography system | Thermo Vanquish | Thermo Vanquish | Thermo Vanquish | Thermo Vanquish |
Column | Thermo Accucore C30 (150 x 2.1mm,2.6um) | Thermo Accucore C30 (150 x 2.1mm,2.6um) | Thermo Accucore C30 (150 x 2.1mm,2.6um) | Thermo Accucore C18 (150 x 2.1mm,2.6um) |
MS Type | ESI | ESI | ESI | ESI |
MS instrument type | Orbitrap | Orbitrap | Orbitrap | Triple quadrupole |
MS instrument name | Thermo Exploris 240 Orbitrap | Thermo Exploris 240 Orbitrap | Thermo Exploris 240 Orbitrap | Thermo TSQ Altis Plus |
Ion Mode | NEGATIVE | UNSPECIFIED | POSITIVE | NEGATIVE |
Units | min | pmol/mg wet tissue weight | pmol/mg wet tissue weight | Peak area |
Chromatography:
Chromatography ID: | CH004189 |
Chromatography Summary: | Four liquid chromatography methods were employed to allow optimal lipidome separation to enhance coverage of lipid species identifications and fast quantification. All details on the respective methods are provided in the attached methods document |
Methods Filename: | FCAVD_methods.pdf |
Instrument Name: | Thermo Vanquish |
Column Name: | Thermo Accucore C30 (150 x 2.1mm,2.6um) |
Column Temperature: | 50 °C |
Flow Gradient: | 0-20 min – 10 to 86% B, 20-22 min – 86 to 95% B, 22-26 min – 95% B, 26-26.1 min – 95 to 10% B, followed by 7.9 min re-equilibration at 10% B. |
Flow Rate: | 0.3 mL/min |
Solvent A: | 50% acetonitrile/50% water; 5 mM ammonium formate; 0.1% formic acid |
Solvent B: | 85% isopropanol/10% acetonitrile/5% water; 5 mM ammonium formate; 0.1% formic acid |
Chromatography Type: | Reversed phase |
Chromatography ID: | CH004190 |
Chromatography Summary: | Four liquid chromatography methods were employed to allow optimal lipidome separation to enhance coverage of lipid species identifications and fast quantification. All details on the respective methods are provided in the attached methods document |
Methods Filename: | FCAVD_methods.pdf |
Instrument Name: | Thermo Vanquish |
Column Name: | Thermo Accucore C30 (150 x 2.1mm,2.6um) |
Column Temperature: | 50 °C |
Flow Gradient: | 0-20 min – 10 to 80% B, 20-37 min – 80 to 95% B, 37-41 min – 95% to 100% B, 41-49 min – 100% B, 49-49.1 100% to 10% B, followed by 7.9 min re-equilibration at 10% |
Flow Rate: | 0.3 mL/min |
Solvent A: | 50% acetonitrile/50% water; containing 5 mM ammonium formate and 0.1% (v/v) formic acid |
Solvent B: | 85% isopropanol/10% acetonitrile/5% water; 5 mM ammonium formate; 0.1% formic acid |
Chromatography Type: | Reversed phase |
Chromatography ID: | CH004191 |
Chromatography Summary: | Four liquid chromatography methods were employed to allow optimal lipidome separation to enhance coverage of lipid species identifications and fast quantification. All details on the respective methods are provided in the attached methods document |
Methods Filename: | FCAVD_methods.pdf |
Instrument Name: | Thermo Vanquish |
Column Name: | Thermo Accucore C30 (150 x 2.1mm,2.6um) |
Column Temperature: | 50 °C |
Flow Gradient: | 0-10 min – 30 to 80% B, 10-27 min – 80 to 95% B, 27-31 min – 95% to 100% B, 31-39 min – 100% B, 39-39.1 100% to 10% B, followed by 7.9 min re-equilibration at 10% B. |
Flow Rate: | 0.3 mL/min |
Solvent A: | 50% acetonitrile/50% water; containing 5 mM ammonium formate and 0.1% (v/v) formic acid |
Solvent B: | 85% isopropanol/10% acetonitrile/5% water; 5 mM ammonium formate; 0.1% formic acid |
Chromatography Type: | Reversed phase |
Chromatography ID: | CH004192 |
Chromatography Summary: | Four liquid chromatography methods were employed to allow optimal lipidome separation to enhance coverage of lipid species identifications and fast quantification. All details on the respective methods are provided in the attached methods document |
Methods Filename: | FCAVD_methods.pdf |
Instrument Name: | Thermo Vanquish |
Column Name: | Thermo Accucore C18 (150 x 2.1mm,2.6um) |
Column Temperature: | 50 °C |
Flow Gradient: | 0-7 min – 30 to 85% B, 7-8 min – 85 to 95% B, 8-10 min – 95% B, 10-10.1 min – 95% to 30% B, followed by 4.9 min re-equilibration at 10% B. |
Flow Rate: | 0.3 mL/min |
Solvent A: | 50% acetonitrile/50% water; 5 mM ammonium formate; 0.1% formic acid |
Solvent B: | 85% isopropanol/10% acetonitrile/5% water; 5 mM ammonium formate; 0.1% formic acid |
Chromatography Type: | Reversed phase |
MS:
MS ID: | MS005235 |
Analysis ID: | AN005510 |
Instrument Name: | Thermo Exploris 240 Orbitrap |
Instrument Type: | Orbitrap |
MS Type: | ESI |
MS Comments: | DDA with with inclusion list for the assessment of PA and LPA recovery rates of Folch and acidified MeOH/CHCl3 lipid extraction in negative ion mode |
Ion Mode: | NEGATIVE |
MS ID: | MS005236 |
Analysis ID: | AN005511 |
Instrument Name: | Thermo Exploris 240 Orbitrap |
Instrument Type: | Orbitrap |
MS Type: | ESI |
MS Comments: | (1) Untargeted lipidomics for human AV lipids identification in DDA mode (2) Serial dilutions of aortic valve-tailored ISTD mixture in pooled sample, extracted by either Folch or acidified MeOH/CHCl3 lipid extraction, used for seven-point calibration curves generation in MS1 or SRM mode |
Ion Mode: | UNSPECIFIED |
MS ID: | MS005237 |
Analysis ID: | AN005512 |
Instrument Name: | Thermo Exploris 240 Orbitrap |
Instrument Type: | Orbitrap |
MS Type: | ESI |
MS Comments: | Untargeted lipidomics for human AV lipids quantification in MS1 positive ion mode |
Ion Mode: | POSITIVE |
MS ID: | MS005238 |
Analysis ID: | AN005513 |
Instrument Name: | Thermo TSQ Altis Plus |
Instrument Type: | Triple quadrupole |
MS Type: | ESI |
MS Comments: | (1) Serial dilutions of aortic valve-tailored ISTD mixture in pooled sample, extracted by either Folch or acidified MeOH/CHCl3 lipid extraction, used for seven-point calibration curves generation in MS1 or SRM mode (2) Targeted lipidomics for human AV lipids quantification in SRM negative ion mode |
Ion Mode: | NEGATIVE |