Metabolomics Structure Database

 
MW REGNO: 29045
Common Name:9-cis-retinoic acid
Systematic Name:(2E,4E,6Z,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohexen-1-yl)nona-2,4,6,8-tetraenoic acid
RefMet Name:9-cis-Retinoic acid
Synonyms:Alitretinoin [PubChem Synonyms]
Exact Mass:
300.2089 (neutral)    Calculate m/z:
Formula:C20H28O2
InChIKey:SHGAZHPCJJPHSC-ZVCIMWCZSA-N
LIPID MAPS Category:Prenol Lipids [PR]
LIPID MAPS mainclass:Isoprenoids [PR01]
LIPID MAPS subclass:Retinoids [PR0109]
SMILES:C/C(=C/C=C/C(=C/C(=O)O)/C)/C=C/C1=C(C)CCCC1(C)C
Studies:Available studies (via RefMet name)

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External database links:

PubChem CID:449171
LIPID MAPS ID:LMPR01090022
CHEBI ID:50648
HMDB ID:HMDB0002369
KEGG ID:C15493
Chemspider ID:395778

Calculated physicochemical properties (?):

Heavy Atoms: 22  
Rings: 1  
Aromatic Rings: 0  
Rotatable Bonds: 5  
van der Waals Molecular volume: 343.94 Å3 molecule-1  
Toplogical Polar Sufrace Area: 37.30 Å2 molecule-1  
Hydrogen Bond Donors: 1  
Hydrogen Bond Acceptors: 2  
logP: 5.60  
Molar Refractivity: 93.76  
Fraction sp3 Carbons: 0.45  
sp3 Carbons: 9  

Human Pathway links:

HMDB and KEGG pathways containing this metabolite

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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