Metabolomics Structure Database
|
|
| MW REGNO: | 41438 |
| Common Name: | Topaquinone |
| Systematic Name: | (2S)-2-amino-3-(6-hydroxy-3,4-dioxocyclohexa-1,5-dien-1-yl)propanoic acid |
| RefMet Name: | Topaquinone |
| Synonyms: | [PubChem Synonyms] |
| Exact Mass: | |
| Formula: | C9H9NO5 |
| InChIKey: | AGMJSPIGDFKRRO-YFKPBYRVSA-N |
| ClassyFire superclass: | Organic acids and derivatives [C0000264] |
| ClassyFire class: | Carboxylic acids and derivatives [C0000265] |
| ClassyFire subclass: | Amino acids, peptides, and analogues [C0000013] |
| ClassyFire direct parent: | Alpha amino acids [C0002404] |
| SMILES: | C(C1=CC(=O)C(=CC1=O)O)[C@@H](C(=O)O)N |
| Studies: | Available studies (via RefMet name) |
Select appropriate tab below to view additional details:
External database links:
| PubChem CID: | 123871 |
| CHEBI ID: | 36076 |
| HMDB ID: | HMDB0011639 |
| Chemspider ID: | 110408 |
| MetaCyc ID: | TOPAQUINONE |
Calculated physicochemical properties (?):
| Heavy Atoms: | 15 |
| Rings: | 1 |
| Aromatic Rings: | 0 |
| Rotatable Bonds: | 3 |
| van der Waals Molecular volume: | 193.65 Å3 molecule-1 |
| Toplogical Polar Sufrace Area: | 117.69 Å2 molecule-1 |
| Hydrogen Bond Donors: | 3 |
| Hydrogen Bond Acceptors: | 5 |
| logP: | -0.41 |
| Molar Refractivity: | 49.55 |
| Fraction sp3 Carbons: | 0.22 |
| sp3 Carbons: | 2 |
Human Pathway links:
HMDB and KEGG pathways containing this metabolite
References
LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200 ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y
