Summary of Study ST003041
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001283. The data can be accessed directly via it's Project DOI: 10.21228/M8VX1B This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST003041 |
Study Title | Soil pH, developmental stages and geographical origin differently influence the root metabolomic diversity and root-related microbial diversity of Echium vulgare from native habitats |
Study Summary | This study examines the impact of different factors (geographic location, soil pH, genetic cluster, developmental stage) on the metabolome and microbiome of wild Echium vulgare, as well as the microbiome-metabolome correlation contained therein. Samples analyzed are wild Echium vulgare plant roots collected at six locations in Austria; out of the six locations, four contain plant roots from two different developmental stages. Extraction of metabolites and subsequent UHPLC-HRMS analysis were performed to obtain data for metabolomics analysis. |
Institute | Aristotle University of Thessaloniki |
Last Name | Rodić |
First Name | Nebojša |
Address | Stepe Stepanovića 5, Čonoplja, Vojvodina, Serbia |
nebojsa.rodic@hotmail.com | |
Phone | +381648766400 |
Submit Date | 2024-01-05 |
Raw Data Available | Yes |
Raw Data File Type(s) | raw(Thermo) |
Analysis Type Detail | LC-MS |
Release Date | 2024-01-16 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
Analysis ID | AN004988 |
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Analysis type | MS |
Chromatography type | Reversed phase |
Chromatography system | Thermo Accela AS |
Column | Waters ACQUITY UPLC HSS C18 (100 x 2.1mm,1.8um) |
MS Type | ESI |
MS instrument type | Orbitrap |
MS instrument name | Thermo LTQ Discovery Orbitrap |
Ion Mode | POSITIVE |
Units | Intensity |
Chromatography:
Chromatography ID: | CH003768 |
Instrument Name: | Thermo Accela AS |
Column Name: | Waters ACQUITY UPLC HSS C18 (100 x 2.1mm,1.8um) |
Column Temperature: | 50 |
Flow Gradient: | 0 min 95A/5B, 1 min 50A/50B, 8 min 0A/100B, 13 min 0A/100B, 13.01 min 95A/5B, 16 min 95A/5B |
Flow Rate: | 0.3 mL/min |
Solvent A: | Ultrapure water (0.1% formic acid) |
Solvent B: | LCMS-grade methanol (0.1% formic acid) |
Chromatography Type: | Reversed phase |