Summary of Study ST002393
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001540. The data can be accessed directly via it's Project DOI: 10.21228/M8N138 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST002393 |
Study Title | Untargeted metabolomics analysis of DSS-treated murine intestinal microbiota cultivated in continuous bioreactors |
Study Summary | We cultivated murine faecal microbiota in six replicate continuous bioreactors. Three bioreactors were supplemented with 1% DSS and compared to the untreated control bioreactors. |
Institute | Helmholtz Centre for Environmental Research |
Department | Molecular Systems Biology |
Last Name | Engelmann |
First Name | Beatrice |
Address | Permoserstrasse 15, 04318 Leipzig, Germany |
beatrice.engelmann@ufz.de | |
Phone | +493411099 |
Submit Date | 2022-11-28 |
Raw Data Available | Yes |
Raw Data File Type(s) | d |
Analysis Type Detail | LC-MS |
Release Date | 2022-12-20 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
Analysis ID | AN003898 | AN003899 |
---|---|---|
Analysis type | MS | MS |
Chromatography type | Reversed phase | Reversed phase |
Chromatography system | Agilent 1260 | Agilent 1260 |
Column | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) | Waters Acquity BEH HSS T3 (100 x 2.1mm,1.8um) |
MS Type | ESI | ESI |
MS instrument type | QTOF | QTOF |
MS instrument name | Agilent 6540 QTOF | Agilent 6540 QTOF |
Ion Mode | NEGATIVE | POSITIVE |
Units | Peak area | Peak area |
MS:
MS ID: | MS003637 |
Analysis ID: | AN003898 |
Instrument Name: | Agilent 6540 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | All samples were acquired in positive and negative ionization mode. The QTOF was set up in centroid mode with a scan range of 60 – 1000 m/z. After each full scan, the five most intense ions (threshold 200 counts) were subjected to fragmentation. The obtained raw data (.d-files) were imported into the Progenesis QI® software (version2.1, Waters Corporation) for further analysis. |
Ion Mode: | NEGATIVE |
MS ID: | MS003638 |
Analysis ID: | AN003899 |
Instrument Name: | Agilent 6540 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | All samples were acquired in positive and negative ionization mode. The QTOF was set up in centroid mode with a scan range of 60 – 1000 m/z. After each full scan, the five most intense ions (threshold 200 counts) were subjected to fragmentation. The obtained raw data (.d-files) were imported into the Progenesis QI® software (version2.1, Waters Corporation) for further analysis. |
Ion Mode: | POSITIVE |