Summary of Study ST002092

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001328. The data can be accessed directly via it's Project DOI: 10.21228/M82978 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST002092
Study TitleAddressing batch effects in large-scale metabolomics with augmented experimental design and meta-analysis
Study SummaryUntargeted LC-MS study conducted using RP and HILIC chromatography on three groups of C. elegans: natural isolates, central metabolism mutants, and UDP-glucuronosyltransferase mutants. An augmented study design, rank transformation of the raw data, strict QA/QC followed by a meta-analysis was used for data analysis.
Institute
University of Georgia - Complex Carbohydrate Research Center
LaboratoryEdison Lab
Last NameGarcia
First NameBrianna
Address315 Riverbend Road
Emailbrianna.garcia@uga.edu
Phone7065424401
Submit Date2022-02-14
Num Groups3
Total Subjects119
Raw Data AvailableYes
Raw Data File Type(s)mzML
Analysis Type DetailLC-MS
Release Date2022-04-04
Release Version1
Brianna Garcia Brianna Garcia
https://dx.doi.org/10.21228/M82978
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Combined analysis:

Analysis ID AN003416 AN003417 AN003418
Analysis type MS MS MS
Chromatography type Reversed phase Reversed phase HILIC
Chromatography system Thermo Vanquish Thermo Vanquish Thermo Vanquish
Column Thermo Scientific Accucore C30 (150 x 2.1mm,2.6um) Thermo Scientific Accucore C30 (150 x 2.1mm,2.6um) Waters Acquity BEH Amide (150 x 2.1mm,1.7um)
MS Type ESI ESI ESI
MS instrument type Orbitrap Orbitrap Orbitrap
MS instrument name Thermo Orbitrap ID-X tribrid Thermo Orbitrap ID-X tribrid Thermo Orbitrap ID-X tribrid
Ion Mode POSITIVE NEGATIVE POSITIVE
Units Ranked Peak Height Ranked Peak Height Ranked Peak Height

MS:

MS ID:MS003181
Analysis ID:AN003416
Instrument Name:Thermo Orbitrap ID-X tribrid
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:LC-MS data was collected using a Thermo Orbitrap ID-X tribrid in full profile mode at 240,000 resolution. A m/z range of 150-2000 was used. Data was centroided using Proteowizard and processed using open source software SLAW for peak picking, alignment, and feature assignment.
Ion Mode:POSITIVE
Capillary Temperature:275
Dry Gas Flow:40
Dry Gas Temp:320
Spray Voltage:3500
Dataformat:.raw Profile
  
MS ID:MS003182
Analysis ID:AN003417
Instrument Name:Thermo Orbitrap ID-X tribrid
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:LC-MS data was collected using a Thermo Orbitrap ID-X tribrid in full profile mode at 240,000 resolution. A m/z range of 150-2000 was used. Data was centroided using Proteowizard and processed using open source software SLAW for peak picking, alignment, and feature assignment.
Ion Mode:NEGATIVE
Capillary Temperature:275
Dry Gas Flow:40
Dry Gas Temp:320
Spray Voltage:2500
Dataformat:.raw Profile
  
MS ID:MS003183
Analysis ID:AN003418
Instrument Name:Thermo Orbitrap ID-X tribrid
Instrument Type:Orbitrap
MS Type:ESI
MS Comments:LC-MS data was collected using a Thermo Orbitrap ID-X tribrid in full profile mode at 240,000 resolution. A m/z range of 70-1050 was used. Data was centroided using Proteowizard and processed using open source software SLAW for peak picking, alignment, and feature assignment.
Ion Mode:POSITIVE
Capillary Temperature:275
Dry Gas Flow:40
Dry Gas Temp:320
Spray Voltage:3500
Dataformat:.raw Profile
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