Summary of Study ST001852
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001168. The data can be accessed directly via it's Project DOI: 10.21228/M8QT2F This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST001852 |
Study Title | Screening of unique bile acid metabolizing bacteria |
Study Summary | We incubated individual bacterial strains at pH 7 or pH 9 with either CDCA, LCA, or 3-oxo-Δ4-LCA as starting substrates. Culture supernatants were collected after 48 hours and 14 bile acids were measured by targeted metabolomics. |
Institute | Keio University School of Medicine |
Department | Dept of Microbiology and Immunology |
Last Name | Koji |
First Name | Atarashi |
Address | 35 Shinanomachi, Shinjuku-ku, Tokyo, JAPAN |
kojiatarashi@keio.jp | |
Phone | 0353633769 |
Submit Date | 2021-06-24 |
Raw Data Available | Yes |
Raw Data File Type(s) | lcd |
Analysis Type Detail | LC-MS |
Release Date | 2021-07-07 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Bacteria (Factor headings shown in green)
mb_sample_id | local_sample_id | Strain |
---|---|---|
SA173109 | A_C. scindens VE202-1 (50uM_3-oxo-Δ4-LCA_pH7) | A_C. scindens VE202 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173110 | A_C. scindens VE202-2 (50uM_3-oxo-Δ4-LCA_pH7) | A_C. scindens VE202 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173111 | A_C. scindens VE202-2 (50uM_3-oxo-Δ4-LCA_pH9) | A_C. scindens VE202 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173112 | A_C. scindens VE202-1 (50uM_3-oxo-Δ4-LCA_pH9) | A_C. scindens VE202 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173113 | A_C. scindens VE202-1 (50uM_CDCA_pH7) | A_C. scindens VE202 | Incubation:CDCA | pH:7 |
SA173114 | A_C. scindens VE202-2 (50uM_CDCA_pH7) | A_C. scindens VE202 | Incubation:CDCA | pH:7 |
SA173115 | A_C. scindens VE202-1 (50uM_CDCA_pH9) | A_C. scindens VE202 | Incubation:CDCA | pH:9 |
SA173116 | A_C. scindens VE202-2 (50uM_CDCA_pH9) | A_C. scindens VE202 | Incubation:CDCA | pH:9 |
SA173117 | A_C. scindens VE202-2 (50uM_LCA_pH7) | A_C. scindens VE202 | Incubation:LCA | pH:7 |
SA173118 | A_C. scindens VE202-1 (50uM_LCA_pH7) | A_C. scindens VE202 | Incubation:LCA | pH:7 |
SA173119 | A_C. scindens VE202-1 (50uM_LCA_pH9) | A_C. scindens VE202 | Incubation:LCA | pH:9 |
SA173120 | A_C. scindens VE202-2 (50uM_LCA_pH9) | A_C. scindens VE202 | Incubation:LCA | pH:9 |
SA173121 | Akkermansia muciniphila St.26-2 (50uM_3-oxo-Δ4-LCA_pH7) | Akkermansia muciniphila St.26 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173122 | Akkermansia muciniphila St.26-1 (50uM_3-oxo-Δ4-LCA_pH7) | Akkermansia muciniphila St.26 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173123 | Akkermansia muciniphila St.26-2 (50uM_3-oxo-Δ4-LCA_pH9) | Akkermansia muciniphila St.26 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173124 | Akkermansia muciniphila St.26-1 (50uM_3-oxo-Δ4-LCA_pH9) | Akkermansia muciniphila St.26 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173125 | Akkermansia muciniphila St.26-2 (50uM_CDCA_pH7) | Akkermansia muciniphila St.26 | Incubation:CDCA | pH:7 |
SA173126 | Akkermansia muciniphila St.26-1 (50uM_CDCA_pH7) | Akkermansia muciniphila St.26 | Incubation:CDCA | pH:7 |
SA173127 | Akkermansia muciniphila St.26-1 (50uM_CDCA_pH9) | Akkermansia muciniphila St.26 | Incubation:CDCA | pH:9 |
SA173128 | Akkermansia muciniphila St.26-2 (50uM_CDCA_pH9) | Akkermansia muciniphila St.26 | Incubation:CDCA | pH:9 |
SA173129 | Akkermansia muciniphila St.26-2 (50uM_LCA_pH7) | Akkermansia muciniphila St.26 | Incubation:LCA | pH:7 |
SA173130 | Akkermansia muciniphila St.26-1 (50uM_LCA_pH7) | Akkermansia muciniphila St.26 | Incubation:LCA | pH:7 |
SA173131 | Akkermansia muciniphila St.26-1 (50uM_LCA_pH9) | Akkermansia muciniphila St.26 | Incubation:LCA | pH:9 |
SA173132 | Akkermansia muciniphila St.26-2 (50uM_LCA_pH9) | Akkermansia muciniphila St.26 | Incubation:LCA | pH:9 |
SA173133 | Akkermansia muciniphila St.27-1 (50uM_3-oxo-Δ4-LCA_pH7) | Akkermansia muciniphila St.27 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173134 | Akkermansia muciniphila St.27-2 (50uM_3-oxo-Δ4-LCA_pH7) | Akkermansia muciniphila St.27 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173135 | Akkermansia muciniphila St.27-1 (50uM_3-oxo-Δ4-LCA_pH9) | Akkermansia muciniphila St.27 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173136 | Akkermansia muciniphila St.27-2 (50uM_3-oxo-Δ4-LCA_pH9) | Akkermansia muciniphila St.27 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173137 | Akkermansia muciniphila St.27-2 (50uM_CDCA_pH7) | Akkermansia muciniphila St.27 | Incubation:CDCA | pH:7 |
SA173138 | Akkermansia muciniphila St.27-1 (50uM_CDCA_pH7) | Akkermansia muciniphila St.27 | Incubation:CDCA | pH:7 |
SA173139 | Akkermansia muciniphila St.27-1 (50uM_CDCA_pH9) | Akkermansia muciniphila St.27 | Incubation:CDCA | pH:9 |
SA173140 | Akkermansia muciniphila St.27-2 (50uM_CDCA_pH9) | Akkermansia muciniphila St.27 | Incubation:CDCA | pH:9 |
SA173141 | Akkermansia muciniphila St.27-1 (50uM_LCA_pH7) | Akkermansia muciniphila St.27 | Incubation:LCA | pH:7 |
SA173142 | Akkermansia muciniphila St.27-2 (50uM_LCA_pH7) | Akkermansia muciniphila St.27 | Incubation:LCA | pH:7 |
SA173143 | Akkermansia muciniphila St.27-2 (50uM_LCA_pH9) | Akkermansia muciniphila St.27 | Incubation:LCA | pH:9 |
SA173144 | Akkermansia muciniphila St.27-1 (50uM_LCA_pH9) | Akkermansia muciniphila St.27 | Incubation:LCA | pH:9 |
SA173145 | Alistipes finegoldii St.15-1 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes finegoldii St.15 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173146 | Alistipes finegoldii St.15-2 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes finegoldii St.15 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173147 | Alistipes finegoldii St.15-2 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes finegoldii St.15 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173148 | Alistipes finegoldii St.15-1 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes finegoldii St.15 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173149 | Alistipes finegoldii St.15-1 (50uM_CDCA_pH7) | Alistipes finegoldii St.15 | Incubation:CDCA | pH:7 |
SA173150 | Alistipes finegoldii St.15-2 (50uM_CDCA_pH7) | Alistipes finegoldii St.15 | Incubation:CDCA | pH:7 |
SA173151 | Alistipes finegoldii St.15-1 (50uM_CDCA_pH9) | Alistipes finegoldii St.15 | Incubation:CDCA | pH:9 |
SA173152 | Alistipes finegoldii St.15-2 (50uM_CDCA_pH9) | Alistipes finegoldii St.15 | Incubation:CDCA | pH:9 |
SA173153 | Alistipes finegoldii St.15-2 (50uM_LCA_pH7) | Alistipes finegoldii St.15 | Incubation:LCA | pH:7 |
SA173154 | Alistipes finegoldii St.15-1 (50uM_LCA_pH7) | Alistipes finegoldii St.15 | Incubation:LCA | pH:7 |
SA173155 | Alistipes finegoldii St.15-1 (50uM_LCA_pH9) | Alistipes finegoldii St.15 | Incubation:LCA | pH:9 |
SA173156 | Alistipes finegoldii St.15-2 (50uM_LCA_pH9) | Alistipes finegoldii St.15 | Incubation:LCA | pH:9 |
SA173157 | Alistipes finegoldii St.16-1 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes finegoldii St.16 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173158 | Alistipes finegoldii St.16-2 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes finegoldii St.16 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173159 | Alistipes finegoldii St.16-1 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes finegoldii St.16 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173160 | Alistipes finegoldii St.16-2 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes finegoldii St.16 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173161 | Alistipes finegoldii St.16-2 (50uM_CDCA_pH7) | Alistipes finegoldii St.16 | Incubation:CDCA | pH:7 |
SA173162 | Alistipes finegoldii St.16-1 (50uM_CDCA_pH7) | Alistipes finegoldii St.16 | Incubation:CDCA | pH:7 |
SA173163 | Alistipes finegoldii St.16-2 (50uM_CDCA_pH9) | Alistipes finegoldii St.16 | Incubation:CDCA | pH:9 |
SA173164 | Alistipes finegoldii St.16-1 (50uM_CDCA_pH9) | Alistipes finegoldii St.16 | Incubation:CDCA | pH:9 |
SA173165 | Alistipes finegoldii St.16-2 (50uM_LCA_pH7) | Alistipes finegoldii St.16 | Incubation:LCA | pH:7 |
SA173166 | Alistipes finegoldii St.16-1 (50uM_LCA_pH7) | Alistipes finegoldii St.16 | Incubation:LCA | pH:7 |
SA173167 | Alistipes finegoldii St.16-1 (50uM_LCA_pH9) | Alistipes finegoldii St.16 | Incubation:LCA | pH:9 |
SA173168 | Alistipes finegoldii St.16-2 (50uM_LCA_pH9) | Alistipes finegoldii St.16 | Incubation:LCA | pH:9 |
SA173169 | Alistipes onderdonkii St.17-1 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes onderdonkii St.17 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173170 | Alistipes onderdonkii St.17-2 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes onderdonkii St.17 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173171 | Alistipes onderdonkii St.17-2 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes onderdonkii St.17 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173172 | Alistipes onderdonkii St.17-1 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes onderdonkii St.17 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173173 | Alistipes onderdonkii St.17-2 (50uM_CDCA_pH7) | Alistipes onderdonkii St.17 | Incubation:CDCA | pH:7 |
SA173174 | Alistipes onderdonkii St.17-1 (50uM_CDCA_pH7) | Alistipes onderdonkii St.17 | Incubation:CDCA | pH:7 |
SA173175 | Alistipes onderdonkii St.17-2 (50uM_CDCA_pH9) | Alistipes onderdonkii St.17 | Incubation:CDCA | pH:9 |
SA173176 | Alistipes onderdonkii St.17-1 (50uM_CDCA_pH9) | Alistipes onderdonkii St.17 | Incubation:CDCA | pH:9 |
SA173177 | Alistipes onderdonkii St.17-1 (50uM_LCA_pH7) | Alistipes onderdonkii St.17 | Incubation:LCA | pH:7 |
SA173178 | Alistipes onderdonkii St.17-2 (50uM_LCA_pH7) | Alistipes onderdonkii St.17 | Incubation:LCA | pH:7 |
SA173179 | Alistipes onderdonkii St.17-2 (50uM_LCA_pH9) | Alistipes onderdonkii St.17 | Incubation:LCA | pH:9 |
SA173180 | Alistipes onderdonkii St.17-1 (50uM_LCA_pH9) | Alistipes onderdonkii St.17 | Incubation:LCA | pH:9 |
SA173181 | Alistipes onderdonkii St.18-1 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes onderdonkii St.18 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173182 | Alistipes onderdonkii St.18-2 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes onderdonkii St.18 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173183 | Alistipes onderdonkii St.18-1 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes onderdonkii St.18 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173184 | Alistipes onderdonkii St.18-2 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes onderdonkii St.18 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173185 | Alistipes onderdonkii St.18-2 (50uM_CDCA_pH7) | Alistipes onderdonkii St.18 | Incubation:CDCA | pH:7 |
SA173186 | Alistipes onderdonkii St.18-1 (50uM_CDCA_pH7) | Alistipes onderdonkii St.18 | Incubation:CDCA | pH:7 |
SA173187 | Alistipes onderdonkii St.18-1 (50uM_CDCA_pH9) | Alistipes onderdonkii St.18 | Incubation:CDCA | pH:9 |
SA173188 | Alistipes onderdonkii St.18-2 (50uM_CDCA_pH9) | Alistipes onderdonkii St.18 | Incubation:CDCA | pH:9 |
SA173189 | Alistipes onderdonkii St.18-2 (50uM_LCA_pH7) | Alistipes onderdonkii St.18 | Incubation:LCA | pH:7 |
SA173190 | Alistipes onderdonkii St.18-1 (50uM_LCA_pH7) | Alistipes onderdonkii St.18 | Incubation:LCA | pH:7 |
SA173191 | Alistipes onderdonkii St.18-2 (50uM_LCA_pH9) | Alistipes onderdonkii St.18 | Incubation:LCA | pH:9 |
SA173192 | Alistipes onderdonkii St.18-1 (50uM_LCA_pH9) | Alistipes onderdonkii St.18 | Incubation:LCA | pH:9 |
SA173205 | Bacteroides dorei St.6-1 (50uM_3-oxo-Δ4-LCA_pH7) | Bacteroides dorei St.6 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173206 | Bacteroides dorei St.6-2 (50uM_3-oxo-Δ4-LCA_pH7) | Bacteroides dorei St.6 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173207 | Bacteroides dorei St.6-2 (50uM_3-oxo-Δ4-LCA_pH9) | Bacteroides dorei St.6 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173208 | Bacteroides dorei St.6-1 (50uM_3-oxo-Δ4-LCA_pH9) | Bacteroides dorei St.6 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173209 | Bacteroides dorei St.6-1 (50uM_CDCA_pH7) | Bacteroides dorei St.6 | Incubation:CDCA | pH:7 |
SA173210 | Bacteroides dorei St.6-2 (50uM_CDCA_pH7) | Bacteroides dorei St.6 | Incubation:CDCA | pH:7 |
SA173211 | Bacteroides dorei St.6-1 (50uM_CDCA_pH9) | Bacteroides dorei St.6 | Incubation:CDCA | pH:9 |
SA173212 | Bacteroides dorei St.6-2 (50uM_CDCA_pH9) | Bacteroides dorei St.6 | Incubation:CDCA | pH:9 |
SA173213 | Bacteroides dorei St.6-1 (50uM_LCA_pH7) | Bacteroides dorei St.6 | Incubation:LCA | pH:7 |
SA173214 | Bacteroides dorei St.6-2 (50uM_LCA_pH7) | Bacteroides dorei St.6 | Incubation:LCA | pH:7 |
SA173215 | Bacteroides dorei St.6-2 (50uM_LCA_pH9) | Bacteroides dorei St.6 | Incubation:LCA | pH:9 |
SA173216 | Bacteroides dorei St.6-1 (50uM_LCA_pH9) | Bacteroides dorei St.6 | Incubation:LCA | pH:9 |
SA173217 | Bacteroides dorei St.7-2 (50uM_3-oxo-Δ4-LCA_pH7) | Bacteroides dorei St.7 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173218 | Bacteroides dorei St.7-1 (50uM_3-oxo-Δ4-LCA_pH7) | Bacteroides dorei St.7 | Incubation:3-oxo-delta4-LCA | pH:7 |
SA173219 | Bacteroides dorei St.7-2 (50uM_3-oxo-Δ4-LCA_pH9) | Bacteroides dorei St.7 | Incubation:3-oxo-delta4-LCA | pH:9 |
SA173220 | Bacteroides dorei St.7-1 (50uM_3-oxo-Δ4-LCA_pH9) | Bacteroides dorei St.7 | Incubation:3-oxo-delta4-LCA | pH:9 |