Summary of Study ST001852
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001168. The data can be accessed directly via it's Project DOI: 10.21228/M8QT2F This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST001852 |
| Study Title | Screening of unique bile acid metabolizing bacteria |
| Study Summary | We incubated individual bacterial strains at pH 7 or pH 9 with either CDCA, LCA, or 3-oxo-Δ4-LCA as starting substrates. Culture supernatants were collected after 48 hours and 14 bile acids were measured by targeted metabolomics. |
| Institute | Keio University School of Medicine |
| Department | Dept of Microbiology and Immunology |
| Last Name | Koji |
| First Name | Atarashi |
| Address | 35 Shinanomachi, Shinjuku-ku, Tokyo, JAPAN |
| kojiatarashi@keio.jp | |
| Phone | 0353633769 |
| Submit Date | 2021-06-24 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | lcd |
| Analysis Type Detail | LC-MS |
| Release Date | 2021-07-07 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Bacteria; Subject species: Bacteria (Factor headings shown in green)
| mb_sample_id | local_sample_id | Strain | Incubation | pH |
|---|---|---|---|---|
| SA173109 | A_C. scindens VE202-1 (50uM_3-oxo-Δ4-LCA_pH7) | A_C. scindens VE202 | 3-oxo-delta4-LCA | 7 |
| SA173110 | A_C. scindens VE202-2 (50uM_3-oxo-Δ4-LCA_pH7) | A_C. scindens VE202 | 3-oxo-delta4-LCA | 7 |
| SA173111 | A_C. scindens VE202-2 (50uM_3-oxo-Δ4-LCA_pH9) | A_C. scindens VE202 | 3-oxo-delta4-LCA | 9 |
| SA173112 | A_C. scindens VE202-1 (50uM_3-oxo-Δ4-LCA_pH9) | A_C. scindens VE202 | 3-oxo-delta4-LCA | 9 |
| SA173113 | A_C. scindens VE202-1 (50uM_CDCA_pH7) | A_C. scindens VE202 | CDCA | 7 |
| SA173114 | A_C. scindens VE202-2 (50uM_CDCA_pH7) | A_C. scindens VE202 | CDCA | 7 |
| SA173115 | A_C. scindens VE202-1 (50uM_CDCA_pH9) | A_C. scindens VE202 | CDCA | 9 |
| SA173116 | A_C. scindens VE202-2 (50uM_CDCA_pH9) | A_C. scindens VE202 | CDCA | 9 |
| SA173117 | A_C. scindens VE202-2 (50uM_LCA_pH7) | A_C. scindens VE202 | LCA | 7 |
| SA173118 | A_C. scindens VE202-1 (50uM_LCA_pH7) | A_C. scindens VE202 | LCA | 7 |
| SA173119 | A_C. scindens VE202-1 (50uM_LCA_pH9) | A_C. scindens VE202 | LCA | 9 |
| SA173120 | A_C. scindens VE202-2 (50uM_LCA_pH9) | A_C. scindens VE202 | LCA | 9 |
| SA173121 | Akkermansia muciniphila St.26-2 (50uM_3-oxo-Δ4-LCA_pH7) | Akkermansia muciniphila St.26 | 3-oxo-delta4-LCA | 7 |
| SA173122 | Akkermansia muciniphila St.26-1 (50uM_3-oxo-Δ4-LCA_pH7) | Akkermansia muciniphila St.26 | 3-oxo-delta4-LCA | 7 |
| SA173123 | Akkermansia muciniphila St.26-2 (50uM_3-oxo-Δ4-LCA_pH9) | Akkermansia muciniphila St.26 | 3-oxo-delta4-LCA | 9 |
| SA173124 | Akkermansia muciniphila St.26-1 (50uM_3-oxo-Δ4-LCA_pH9) | Akkermansia muciniphila St.26 | 3-oxo-delta4-LCA | 9 |
| SA173125 | Akkermansia muciniphila St.26-2 (50uM_CDCA_pH7) | Akkermansia muciniphila St.26 | CDCA | 7 |
| SA173126 | Akkermansia muciniphila St.26-1 (50uM_CDCA_pH7) | Akkermansia muciniphila St.26 | CDCA | 7 |
| SA173127 | Akkermansia muciniphila St.26-1 (50uM_CDCA_pH9) | Akkermansia muciniphila St.26 | CDCA | 9 |
| SA173128 | Akkermansia muciniphila St.26-2 (50uM_CDCA_pH9) | Akkermansia muciniphila St.26 | CDCA | 9 |
| SA173129 | Akkermansia muciniphila St.26-2 (50uM_LCA_pH7) | Akkermansia muciniphila St.26 | LCA | 7 |
| SA173130 | Akkermansia muciniphila St.26-1 (50uM_LCA_pH7) | Akkermansia muciniphila St.26 | LCA | 7 |
| SA173131 | Akkermansia muciniphila St.26-1 (50uM_LCA_pH9) | Akkermansia muciniphila St.26 | LCA | 9 |
| SA173132 | Akkermansia muciniphila St.26-2 (50uM_LCA_pH9) | Akkermansia muciniphila St.26 | LCA | 9 |
| SA173133 | Akkermansia muciniphila St.27-1 (50uM_3-oxo-Δ4-LCA_pH7) | Akkermansia muciniphila St.27 | 3-oxo-delta4-LCA | 7 |
| SA173134 | Akkermansia muciniphila St.27-2 (50uM_3-oxo-Δ4-LCA_pH7) | Akkermansia muciniphila St.27 | 3-oxo-delta4-LCA | 7 |
| SA173135 | Akkermansia muciniphila St.27-1 (50uM_3-oxo-Δ4-LCA_pH9) | Akkermansia muciniphila St.27 | 3-oxo-delta4-LCA | 9 |
| SA173136 | Akkermansia muciniphila St.27-2 (50uM_3-oxo-Δ4-LCA_pH9) | Akkermansia muciniphila St.27 | 3-oxo-delta4-LCA | 9 |
| SA173137 | Akkermansia muciniphila St.27-2 (50uM_CDCA_pH7) | Akkermansia muciniphila St.27 | CDCA | 7 |
| SA173138 | Akkermansia muciniphila St.27-1 (50uM_CDCA_pH7) | Akkermansia muciniphila St.27 | CDCA | 7 |
| SA173139 | Akkermansia muciniphila St.27-1 (50uM_CDCA_pH9) | Akkermansia muciniphila St.27 | CDCA | 9 |
| SA173140 | Akkermansia muciniphila St.27-2 (50uM_CDCA_pH9) | Akkermansia muciniphila St.27 | CDCA | 9 |
| SA173141 | Akkermansia muciniphila St.27-1 (50uM_LCA_pH7) | Akkermansia muciniphila St.27 | LCA | 7 |
| SA173142 | Akkermansia muciniphila St.27-2 (50uM_LCA_pH7) | Akkermansia muciniphila St.27 | LCA | 7 |
| SA173143 | Akkermansia muciniphila St.27-2 (50uM_LCA_pH9) | Akkermansia muciniphila St.27 | LCA | 9 |
| SA173144 | Akkermansia muciniphila St.27-1 (50uM_LCA_pH9) | Akkermansia muciniphila St.27 | LCA | 9 |
| SA173145 | Alistipes finegoldii St.15-1 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes finegoldii St.15 | 3-oxo-delta4-LCA | 7 |
| SA173146 | Alistipes finegoldii St.15-2 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes finegoldii St.15 | 3-oxo-delta4-LCA | 7 |
| SA173147 | Alistipes finegoldii St.15-2 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes finegoldii St.15 | 3-oxo-delta4-LCA | 9 |
| SA173148 | Alistipes finegoldii St.15-1 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes finegoldii St.15 | 3-oxo-delta4-LCA | 9 |
| SA173149 | Alistipes finegoldii St.15-1 (50uM_CDCA_pH7) | Alistipes finegoldii St.15 | CDCA | 7 |
| SA173150 | Alistipes finegoldii St.15-2 (50uM_CDCA_pH7) | Alistipes finegoldii St.15 | CDCA | 7 |
| SA173151 | Alistipes finegoldii St.15-1 (50uM_CDCA_pH9) | Alistipes finegoldii St.15 | CDCA | 9 |
| SA173152 | Alistipes finegoldii St.15-2 (50uM_CDCA_pH9) | Alistipes finegoldii St.15 | CDCA | 9 |
| SA173153 | Alistipes finegoldii St.15-2 (50uM_LCA_pH7) | Alistipes finegoldii St.15 | LCA | 7 |
| SA173154 | Alistipes finegoldii St.15-1 (50uM_LCA_pH7) | Alistipes finegoldii St.15 | LCA | 7 |
| SA173155 | Alistipes finegoldii St.15-1 (50uM_LCA_pH9) | Alistipes finegoldii St.15 | LCA | 9 |
| SA173156 | Alistipes finegoldii St.15-2 (50uM_LCA_pH9) | Alistipes finegoldii St.15 | LCA | 9 |
| SA173157 | Alistipes finegoldii St.16-1 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes finegoldii St.16 | 3-oxo-delta4-LCA | 7 |
| SA173158 | Alistipes finegoldii St.16-2 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes finegoldii St.16 | 3-oxo-delta4-LCA | 7 |
| SA173159 | Alistipes finegoldii St.16-1 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes finegoldii St.16 | 3-oxo-delta4-LCA | 9 |
| SA173160 | Alistipes finegoldii St.16-2 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes finegoldii St.16 | 3-oxo-delta4-LCA | 9 |
| SA173161 | Alistipes finegoldii St.16-2 (50uM_CDCA_pH7) | Alistipes finegoldii St.16 | CDCA | 7 |
| SA173162 | Alistipes finegoldii St.16-1 (50uM_CDCA_pH7) | Alistipes finegoldii St.16 | CDCA | 7 |
| SA173163 | Alistipes finegoldii St.16-2 (50uM_CDCA_pH9) | Alistipes finegoldii St.16 | CDCA | 9 |
| SA173164 | Alistipes finegoldii St.16-1 (50uM_CDCA_pH9) | Alistipes finegoldii St.16 | CDCA | 9 |
| SA173165 | Alistipes finegoldii St.16-2 (50uM_LCA_pH7) | Alistipes finegoldii St.16 | LCA | 7 |
| SA173166 | Alistipes finegoldii St.16-1 (50uM_LCA_pH7) | Alistipes finegoldii St.16 | LCA | 7 |
| SA173167 | Alistipes finegoldii St.16-1 (50uM_LCA_pH9) | Alistipes finegoldii St.16 | LCA | 9 |
| SA173168 | Alistipes finegoldii St.16-2 (50uM_LCA_pH9) | Alistipes finegoldii St.16 | LCA | 9 |
| SA173169 | Alistipes onderdonkii St.17-1 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes onderdonkii St.17 | 3-oxo-delta4-LCA | 7 |
| SA173170 | Alistipes onderdonkii St.17-2 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes onderdonkii St.17 | 3-oxo-delta4-LCA | 7 |
| SA173171 | Alistipes onderdonkii St.17-2 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes onderdonkii St.17 | 3-oxo-delta4-LCA | 9 |
| SA173172 | Alistipes onderdonkii St.17-1 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes onderdonkii St.17 | 3-oxo-delta4-LCA | 9 |
| SA173173 | Alistipes onderdonkii St.17-2 (50uM_CDCA_pH7) | Alistipes onderdonkii St.17 | CDCA | 7 |
| SA173174 | Alistipes onderdonkii St.17-1 (50uM_CDCA_pH7) | Alistipes onderdonkii St.17 | CDCA | 7 |
| SA173175 | Alistipes onderdonkii St.17-2 (50uM_CDCA_pH9) | Alistipes onderdonkii St.17 | CDCA | 9 |
| SA173176 | Alistipes onderdonkii St.17-1 (50uM_CDCA_pH9) | Alistipes onderdonkii St.17 | CDCA | 9 |
| SA173177 | Alistipes onderdonkii St.17-1 (50uM_LCA_pH7) | Alistipes onderdonkii St.17 | LCA | 7 |
| SA173178 | Alistipes onderdonkii St.17-2 (50uM_LCA_pH7) | Alistipes onderdonkii St.17 | LCA | 7 |
| SA173179 | Alistipes onderdonkii St.17-2 (50uM_LCA_pH9) | Alistipes onderdonkii St.17 | LCA | 9 |
| SA173180 | Alistipes onderdonkii St.17-1 (50uM_LCA_pH9) | Alistipes onderdonkii St.17 | LCA | 9 |
| SA173181 | Alistipes onderdonkii St.18-1 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes onderdonkii St.18 | 3-oxo-delta4-LCA | 7 |
| SA173182 | Alistipes onderdonkii St.18-2 (50uM_3-oxo-Δ4-LCA_pH7) | Alistipes onderdonkii St.18 | 3-oxo-delta4-LCA | 7 |
| SA173183 | Alistipes onderdonkii St.18-1 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes onderdonkii St.18 | 3-oxo-delta4-LCA | 9 |
| SA173184 | Alistipes onderdonkii St.18-2 (50uM_3-oxo-Δ4-LCA_pH9) | Alistipes onderdonkii St.18 | 3-oxo-delta4-LCA | 9 |
| SA173185 | Alistipes onderdonkii St.18-2 (50uM_CDCA_pH7) | Alistipes onderdonkii St.18 | CDCA | 7 |
| SA173186 | Alistipes onderdonkii St.18-1 (50uM_CDCA_pH7) | Alistipes onderdonkii St.18 | CDCA | 7 |
| SA173187 | Alistipes onderdonkii St.18-1 (50uM_CDCA_pH9) | Alistipes onderdonkii St.18 | CDCA | 9 |
| SA173188 | Alistipes onderdonkii St.18-2 (50uM_CDCA_pH9) | Alistipes onderdonkii St.18 | CDCA | 9 |
| SA173189 | Alistipes onderdonkii St.18-2 (50uM_LCA_pH7) | Alistipes onderdonkii St.18 | LCA | 7 |
| SA173190 | Alistipes onderdonkii St.18-1 (50uM_LCA_pH7) | Alistipes onderdonkii St.18 | LCA | 7 |
| SA173191 | Alistipes onderdonkii St.18-2 (50uM_LCA_pH9) | Alistipes onderdonkii St.18 | LCA | 9 |
| SA173192 | Alistipes onderdonkii St.18-1 (50uM_LCA_pH9) | Alistipes onderdonkii St.18 | LCA | 9 |
| SA173205 | Bacteroides dorei St.6-1 (50uM_3-oxo-Δ4-LCA_pH7) | Bacteroides dorei St.6 | 3-oxo-delta4-LCA | 7 |
| SA173206 | Bacteroides dorei St.6-2 (50uM_3-oxo-Δ4-LCA_pH7) | Bacteroides dorei St.6 | 3-oxo-delta4-LCA | 7 |
| SA173207 | Bacteroides dorei St.6-2 (50uM_3-oxo-Δ4-LCA_pH9) | Bacteroides dorei St.6 | 3-oxo-delta4-LCA | 9 |
| SA173208 | Bacteroides dorei St.6-1 (50uM_3-oxo-Δ4-LCA_pH9) | Bacteroides dorei St.6 | 3-oxo-delta4-LCA | 9 |
| SA173209 | Bacteroides dorei St.6-1 (50uM_CDCA_pH7) | Bacteroides dorei St.6 | CDCA | 7 |
| SA173210 | Bacteroides dorei St.6-2 (50uM_CDCA_pH7) | Bacteroides dorei St.6 | CDCA | 7 |
| SA173211 | Bacteroides dorei St.6-1 (50uM_CDCA_pH9) | Bacteroides dorei St.6 | CDCA | 9 |
| SA173212 | Bacteroides dorei St.6-2 (50uM_CDCA_pH9) | Bacteroides dorei St.6 | CDCA | 9 |
| SA173213 | Bacteroides dorei St.6-1 (50uM_LCA_pH7) | Bacteroides dorei St.6 | LCA | 7 |
| SA173214 | Bacteroides dorei St.6-2 (50uM_LCA_pH7) | Bacteroides dorei St.6 | LCA | 7 |
| SA173215 | Bacteroides dorei St.6-2 (50uM_LCA_pH9) | Bacteroides dorei St.6 | LCA | 9 |
| SA173216 | Bacteroides dorei St.6-1 (50uM_LCA_pH9) | Bacteroides dorei St.6 | LCA | 9 |
| SA173217 | Bacteroides dorei St.7-2 (50uM_3-oxo-Δ4-LCA_pH7) | Bacteroides dorei St.7 | 3-oxo-delta4-LCA | 7 |
| SA173218 | Bacteroides dorei St.7-1 (50uM_3-oxo-Δ4-LCA_pH7) | Bacteroides dorei St.7 | 3-oxo-delta4-LCA | 7 |
| SA173219 | Bacteroides dorei St.7-2 (50uM_3-oxo-Δ4-LCA_pH9) | Bacteroides dorei St.7 | 3-oxo-delta4-LCA | 9 |
| SA173220 | Bacteroides dorei St.7-1 (50uM_3-oxo-Δ4-LCA_pH9) | Bacteroides dorei St.7 | 3-oxo-delta4-LCA | 9 |
